Dear potential participants,

iPRG conducts annual or bi-annual community study on proteomics data 
analysis. This year, the study focuses on label-free quantitation methods.

The study instructions are here:

http://www.abrf.org/ResearchGroups/ProteomicsInformaticsResearchGroup/Studies/iPRG2015_Study_Instructions_FINAL.PDF

To allow more time for you to finish the data analysis, the deadline for 
submitting your iPRG 2015 results will be extended to Feb. 13, 2015 
(Friday). 

Given the extra time, please consider submitting multiple entries if you 
want to explore different methods. Please also pass this notice to your 
friends and colleagues and encourage them to try!

One participant alerted us that the Skyline peak intensity table was 
non-unique (i.e. some peptides have duplicate lines). A table with the 
duplicates removed (SkylineIntensities_unique.tsv) has been uploaded to the 
same directory in the same FTP site (ftp.peptideatlas.org). If you are 
using that file as your input, you may want to try to apply your method to 
the new "unique" table to see if your results change.

Sincerely,

The ABRF Proteome Informatics Research Group (iPRG)

Eugene Kapp – Walter and Eliza Hall Institute of Medical Research (Co-chair)
Henry Lam – Hong Kong University of Science and Technology (Co-chair)
Brett Phinney – UC Davis (ABRF Executive Board Liaison)
John Cottrell – Matrix Science Ltd
Michael Hoopmann – Institute for Systems Biology
Sangtae Kim – Pacific Northwest National Laboratory
Thomas Neubert – New York University
Magnus Palmblad – Leiden University Medical Center
Olga Vitek – Northeastern University
Sue Weintraub – University of Texas Health Science Center at San Antonio

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