Did you solved this???? El miércoles, 3 de septiembre de 2014, 9:53:36 (UTC+2), Jana Horáková escribió: > > Hi, > I want to use TPP (Tandem) to generate pepXML out of my wiff files. I have > encountered a problem when trying to do a database search of my mzML file. > I used AB Sciex MS converter (release June 2012) with the following batch > command to convert my wiff files to mzML. > > AB_SCIEX_MS_Converter WIFF "C:\AB SCIEX\ProteinPilot Data\Data\E1m.wiff" > -centroid MZML "C:\AB SCIEX\ProteinPilot Data\Data\E1m.xml" /index > /nocompression > Pause > > I tried leaving out /index /nocompression or doing a -profile MZML > conversion with the same outcome in TPP. The error message is pasted below. > > *EXECUTING: run_in c:/Inetpub/wwwroot/ISB/data; c:\Inetpub\tpp-bin\tandem > c:/Inetpub/wwwroot/ISB/data/140728_JB_E1m.tandem.params * > > X! TANDEM Jackhammer TPP (2013.06.15.1 - LabKey, Insilicos, ISB) > > Loading spectra (mzParser).c:/Inetpub/wwwroot/ISB/data/140728_JB_E1m.mzml(1) > : error 2: Syntax error parsing XML. > > command "c:\Inetpub\tpp-bin\tandem > c:/Inetpub/wwwroot/ISB/data/140728_JB_E1m.tandem.params" failed: Unknown error > > *Command FAILED* > RETURN CODE:63744 > > Thank you for any suggestions. > > Jana >
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