Hello,
While we have not tested Windows Server 2016 specifically, we have not had
any observed or reported instances of this component failing to install.
Are you able to check if other components of TPP work?  Otherwise, have you
tried re-installing and/or rebooting?

We do use the PWiz installation directly as distributed by them, so if all
else fails, I would check to see if they are compatible with your system.

Hope this helps,
--Luis


On Thu, Feb 2, 2017 at 11:19 AM, Cedar McKay <cmc...@uw.edu> wrote:

> Hello, I'm a relatively new TPP user. I used the guide:
> http://tools.proteomecenter.org/wiki/index.php?title=TPP:5.0_Installation
> to install TPP 5.0 on Windows Server 2016.
>
> The guide says "no dependencies are required to install TPP on a modern
> Windows system", and I did make sure to check the ProteoWizard and
> ProteoWizard dependencies checkbox.
>
> The installer ran with no errors.
>
> After installing, I started to follow the tutorial
> http://tools.proteomecenter.org/wiki/index.php?title=TPP_Tutorial, and
> the very first step (Convert raw data to the mzML format)
> fails with this error:
>
> 'C:/TPP/bin/msconvert' is not recognized as an internal or external
> command,
> operable program or batch file.
>
> Looking in the C:/TPP/bin/msconvert directory, there is no msconvert
> binary.
>
> Help much appreciated.
>
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