Hi Sud, I think you can do that with excel. Select the cells that have the modified peptides. Use the find and replace option to find" [147.04] " and replace it with nothing, i.e. just leave the replace box empty. That should be enough to take out the modification from the peptide sequence.
I hope this is not a too late response and that the answer is actually helpful. On Tue, Dec 15, 2020 at 4:58 PM sudarshan kumar <kumarsuders...@gmail.com> wrote: > Dear members, > I want to use peptide sequences from the result after the peptide prophet > search. But the sequences also contains modification mass in it. > > P.GSM[147.04]GLPGPKGSSGDPGKPGEAGNA.G > > How can we remove it. so that the column of sequences can be converted > into fasta files. > Reg, > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/83ad40ed-59d2-46dc-a7c6-6ee7d9b91cf1n%40googlegroups.com > <https://groups.google.com/d/msgid/spctools-discuss/83ad40ed-59d2-46dc-a7c6-6ee7d9b91cf1n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- *Aziz Alnakli* Master of Research Candidate (Bioinformatics Research Group) *Faculty of Science and Engineering** | * Level 1 Room 120, F7B Building (4 Wally's Walk) Macquarie University, NSW 2109, Australia *M:* + 61 424375954* | aziz.alna...@students.mq.edu.au <aziz.alna...@students.mq.edu.au>* <http://mq.edu.au/> [image: Macquarie University] <http://mq.edu.au/> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CANqhZV4a7Q7K41QJ%2BTK%2B63P1wckGz31g_NGbXVO5PvzRH5stXQ%40mail.gmail.com.
