You would put 1 in that box, since you know you injected 1 ug.

On Thursday, December 17, 2020 at 7:14:05 AM UTC-5 meharunn...@gmail.com 
wrote:

> Thanks Luis.
> I started TPP in a new browser and it worked. 
> Further for my dataset, I need protein abundance to check the comparative 
> protein expression in each sample. 
> While using St Peter tool, on what basis the option "*Amount of protein 
> sample measured*" is decided.
> I saw in one of the tutorial that they have taken it as 2.0 micrograms. 
> For initial MS run, I have injected 1 microgram peptide for obtaining 
> shotgun data, so what value I should put here for quantification of 
> proteins present in my sample. 
>
> (Queried option is highlighted in this snapshot)
> [image: image.png]
>
> Looking forward to hearing from you. 
> Thanks and regards,
>
> *Mehar Un Nissa*
> Research Scholar,
> Proteomics Lab.
> Department of Biosciences and Bioengineering,
> Indian Institute of Technology, Bombay-400076
>
> On Wed, Dec 16, 2020 at 9:05 AM 'Luis Mendoza' via spctools-discuss <
> spctools...@googlegroups.com> wrote:
>
>> Hello Mehar,
>> It seems that there was an issue with reading your user session cookie -- 
>> perhaps you followed an old link, reinstalled TPP while logged in, or your 
>> browser does not support cookies.
>> I suggest starting a new browser session and try to run TPP again; let us 
>> know if the issue persists.  Has this happened more than once?
>> Cheers,
>> --Luis
>>
>>
>> On Mon, Dec 14, 2020 at 8:56 AM Mehar Un Nissa <meharunn...@gmail.com> 
>> wrote:
>>
>>> Hello TPP Team,
>>> I want to use St. Peter tool in TPP for Label free quantification of 
>>> some dataset. 
>>> Once I go to TPP Tools--> Quantify Label Free (MS2), the web page 
>>> redirected to the login page when I login again some error is coming as 
>>> under:
>>>
>>> [image: image.png]
>>>
>>> Could you please through some light in this regard. 
>>> Looking forward to hearing from you. 
>>> Thanks and regards,
>>>
>>> *Mehar Un Nissa*
>>> Research Scholar,
>>> Proteomics Lab.
>>> Department of Biosciences and Bioengineering,
>>> Indian Institute of Technology, Bombay-400076
>>>
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