I’m not certain I understand your question. If you’re looking for a template X!Tandem params file, there should be one in your installation in the data/params folder. There should be a tandem_params.xml? In the same folder as the template comet.params? Do you have that?
Eric *From:* spctools-discuss@googlegroups.com <spctools-discuss@googlegroups.com> *On Behalf Of *Anju Nagpal *Sent:* Monday, July 25, 2022 10:33 PM *To:* spctools-discuss@googlegroups.com *Subject:* Re: [spctools-discuss] Comet parameters Can i get the parameter list for Tandem search? With regards Anju Nagpal PhD Scholar Animal Biotechnology Centre National Dairy Research Institute, Karnal On Tue, 26 Jul 2022, 11:01 am 'Eric Deutsch' via spctools-discuss, < spctools-discuss@googlegroups.com> wrote: Correct, if you did not use iodoacetamide, then change it to 0.0 *From:* spctools-discuss@googlegroups.com <spctools-discuss@googlegroups.com> *On Behalf Of *Anju Nagpal *Sent:* Monday, July 25, 2022 9:35 PM *To:* spctools-discuss@googlegroups.com *Subject:* Re: [spctools-discuss] Comet parameters What if my experiment does not include any alkylation step? Do I need to change it to 0? On Mon, Jul 25, 2022 at 8:26 PM 'Eric Deutsch' via spctools-discuss < spctools-discuss@googlegroups.com> wrote: Since Cys is almost always alkylated with iodoacetamide in most experiments: http://www.unimod.org/modifications_view.php?editid1=4 *From:* spctools-discuss@googlegroups.com <spctools-discuss@googlegroups.com> *On Behalf Of *Anju Nagpal *Sent:* Monday, July 25, 2022 1:59 AM *To:* spctools-discuss <spctools-discuss@googlegroups.com> *Subject:* [spctools-discuss] Comet parameters Hi, Why is a default value of 57.021464 is added for cysteine in comet parameter? -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/45a5655b-90fc-4625-9f1f-c0a30cd76d61n%40googlegroups.com <https://groups.google.com/d/msgid/spctools-discuss/45a5655b-90fc-4625-9f1f-c0a30cd76d61n%40googlegroups.com?utm_medium=email&utm_source=footer> . -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/bc653a0509e08caa926caf3dde321387%40mail.gmail.com <https://groups.google.com/d/msgid/spctools-discuss/bc653a0509e08caa926caf3dde321387%40mail.gmail.com?utm_medium=email&utm_source=footer> . -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CAHwL-OVKmd1%2Bd49-GvW8t0f62uJVNvkjpV%2B-dcFxvXdOd9Mk1g%40mail.gmail.com <https://groups.google.com/d/msgid/spctools-discuss/CAHwL-OVKmd1%2Bd49-GvW8t0f62uJVNvkjpV%2B-dcFxvXdOd9Mk1g%40mail.gmail.com?utm_medium=email&utm_source=footer> . -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/ddbbf9fd44038866975ee0bd47015830%40mail.gmail.com <https://groups.google.com/d/msgid/spctools-discuss/ddbbf9fd44038866975ee0bd47015830%40mail.gmail.com?utm_medium=email&utm_source=footer> . -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CAHwL-OV3_Ay3tZVtykfGjTA5Tt%3DKUN4OcpSBEtCgbHtM0HS-xQ%40mail.gmail.com <https://groups.google.com/d/msgid/spctools-discuss/CAHwL-OV3_Ay3tZVtykfGjTA5Tt%3DKUN4OcpSBEtCgbHtM0HS-xQ%40mail.gmail.com?utm_medium=email&utm_source=footer> . -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/47278888d73d615db4d263d501a33973%40mail.gmail.com.
