ah, I see, okay, sure, I put one here: http://www.tppms.org/tmp/msfragger.params
On Tue, Feb 21, 2023 at 9:42 PM Priti Panchal <panchalpriti...@gmail.com> wrote: > Sir > I need to upload the file at the "MSFragger search" step in TPP. I tried > using the link sent above but could not get one. It would be a great help > if you could share the text file of the parameter. > Thank you > Priti > PhD Scholar > Animal Biotechnology Centre, NDRI > Karnal > > > On Wed, Feb 22, 2023 at 10:05 AM 'Eric Deutsch' via spctools-discuss < > spctools-discuss@googlegroups.com> wrote: > >> MSFragger itself can generate one for you, just run something like: >> >> >> >> /usr/bin/java -jar msfragger-3.2.one-jar.jar --config closed >> >> mv closed_fragger.params msfragger.params >> >> >> >> >> >> >> >> *From:* spctools-discuss@googlegroups.com < >> spctools-discuss@googlegroups.com> *On Behalf Of *Priti Panchal >> *Sent:* Tuesday, February 21, 2023 8:32 PM >> *To:* spctools-discuss@googlegroups.com >> *Subject:* [spctools-discuss] MSFragger param >> >> >> >> Hello all >> >> I need to run my file through the MSFragger pipeline in TPP. Can anyone >> share an MSFragger param file with me? >> >> Thanks and Regards >> >> Priti >> >> PhD Scholar >> >> Animal Biotechnology Centre, NDRI >> >> Karnal >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discuss+unsubscr...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/CANdSM59O81qiZHaU-L0_qQYzLr3O5Hi-bFCkMu_sH2Y6eWb%2B1Q%40mail.gmail.com >> <https://groups.google.com/d/msgid/spctools-discuss/CANdSM59O81qiZHaU-L0_qQYzLr3O5Hi-bFCkMu_sH2Y6eWb%2B1Q%40mail.gmail.com?utm_medium=email&utm_source=footer> >> . >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discuss+unsubscr...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/17c1fad4b9a63b3ae0133e4872138a38%40mail.gmail.com >> <https://groups.google.com/d/msgid/spctools-discuss/17c1fad4b9a63b3ae0133e4872138a38%40mail.gmail.com?utm_medium=email&utm_source=footer> >> . >> > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CAKiuq%3DkkQiey0gGtsPdphPJKEGsuAnNmdQc-Qk1c%2BauWRcoe4g%40mail.gmail.com.
