Hi David, Thank you for such a quick reply!
I used tpp version 6.2.0 run via a singularity image and I produced the table by including the EXCELXX option in proteinprophet. Cheers, Murielle On Wednesday, June 28, 2023 at 12:44:03 AM UTC+2 David Shteynberg wrote: > Hi Murielle, > > Thanks for using the TPP and submitting your question here. When I try > the latest version of the TPP and run ProteinProphet through there, the > columns exported in my tab separated file from ProteinProphet are different > from yours. Can you please provide a bit more information about how you > generated this file and which version of the software you used? > > Cheers, > -David > > On Tue, Jun 27, 2023 at 7:10 AM muriell...@gmail.com <muriell...@gmail.com> > wrote: > >> Hi all, >> >> I have two questions concerning the output of ProteinProphet : >> >> 1) Why do I have some entries for which the total number of peptides is >> lower than the number of unique peptides? (see columns 5 and 6 below, an >> extract of my output table) >> >> [image: protein prophet output.jpeg] >> 2) Does the column "total number of peptides" correspond to spectral >> counts? >> >> Thank you very much , >> >> Murielle >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discu...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/be3b35c9-e308-4e35-8551-03425f7d1704n%40googlegroups.com >> >> <https://groups.google.com/d/msgid/spctools-discuss/be3b35c9-e308-4e35-8551-03425f7d1704n%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/04691060-aedc-4d65-87a0-ae40aa92f889n%40googlegroups.com.
