Hello Tanmay, How did you generate the input pepXML files? Which search engine did you use? Are you able to open both of those files and verify that they have results? Can you process results from another search engine (e.g. Comet or X!Tandem) of the same mzML data? Cheers, --Luis
On Wed, Jul 26, 2023 at 8:01 AM Tanmay Singh <tanmay2...@gmail.com> wrote: > Dear all > I keep trying to run PeptideProphet on two * pep.xml files but keep > getting this error. What could the issue be and how can I solve it? > > Error > C:/TPP/bin/xinteract (TPP v6.3.2 Arcus, Build 202305092202-8951 > (Windows_NT-x86_64)) using MAXTHREADS=1 for PeptideProphet... running: > "C:/TPP/bin/InteractParser "interact.pep.xml" > "OR20080317_S_SILAC-LH_1-1_01.pep.xml" > "OR20080320_S_SILAC-LH_1-1_11.pep.xml" -L"7"" file 1: > OR20080317_S_SILAC-LH_1-1_01.pep.xml file 2: > OR20080320_S_SILAC-LH_1-1_11.pep.xml processed altogether 17620 results > command "C:/TPP/bin/InteractParser "interact.pep.xml" > "OR20080317_S_SILAC-LH_1-1_01.pep.xml" > "OR20080320_S_SILAC-LH_1-1_11.pep.xml" -L"7"" failed: Unknown error > command "C:/TPP/bin/InteractParser "interact.pep.xml" > "OR20080317_S_SILAC-LH_1-1_01.pep.xml" > "OR20080320_S_SILAC-LH_1-1_11.pep.xml" -L"7"" exited with non-zero exit > code: -1073741819 QUIT - the job is incomplete > > Any help would be appreciated > > Many thanks > Tanmay > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/9e4cd396-837f-4147-8cb1-bf186e87e7e0n%40googlegroups.com > <https://groups.google.com/d/msgid/spctools-discuss/9e4cd396-837f-4147-8cb1-bf186e87e7e0n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CACyS9br_6pYdx6zxUvTnbSfUVww6n%2Bb%2B3fjVXcQMGVmzGzpK-g%40mail.gmail.com.
