This Scaffold help page lists supported formats including psm.tsv for Fragger: https://support.proteomesoftware.com/hc/en-us/articles/360057031731-Scaffold-Software-Supported-Data-Formats
On Tue, Jan 7, 2025 at 10:14 AM Eric Kischell <[email protected]> wrote: > > Hello, > > We are integrating MSFragger with Scaffold on the command line (i.e. no > Fragpipe GUI). > Does anybody know what exact files and formats (pepXML or tsv) Scaffold > expects? > thx in advance > [email protected] > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion visit > https://groups.google.com/d/msgid/spctools-discuss/4abf9ae8-9ec5-41ba-90e7-1b17c9b6abe3n%40googlegroups.com > <https://groups.google.com/d/msgid/spctools-discuss/4abf9ae8-9ec5-41ba-90e7-1b17c9b6abe3n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion visit https://groups.google.com/d/msgid/spctools-discuss/CAJqD6EOEgUrZ7b1bAQ-ZLN_QxsbRYKX6cFzzko1dw8N4MyzgSA%40mail.gmail.com.
