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Am 23.03.2010 00:45, schrieb phil_stephens:
> Hello,
> 
> Thank you for developing Sphinx. It has enhanced our software
> documentation so much!
> 
> I am having what appears to be a very uncommon problem, based on
> searching this group for a standard Sphinx error message "WARNING:
> toctree contains reference to nonexisting document". That search
> returns only my previous post! This seems unlikely that I would have
> 700 WARNINGS and other users would never get this?  Simply, we are
> looking for a clean build process. These warnings appear to tell us to
> fix something, do they not?  Each of them refers to a (~) + a method
> call for a class in our library. I don't know why Sphinx would want to
> create a document for each method, maybe I am missing something.
> 
> Does anyone else get these warnings? If so, do you simply ignore them?
> Or, are they indicating to me that something is wrong with the
> structure of my Sphinx sources?
> 
> Please, please help. I will be glad to share the code with you if you
> need more information. It sits at http://code.google.com/p/pysal
> 
> Example stdout:
> 
> /Users/*****/code/pysal/doc/source/library/weights/weights.txt::
> WARNING: toctree contains reference to nonexisting document 'library/
> weights/~W.id_order'

First, sorry for the delayed answer.

I see that your conf.py references a "numpydoc" extension.  I assumed that
this is the one that can be found on PyPI?  With that, I could reproduce
your problem, and I'll investigate later today when it's more quiet around
here.

cheers,
Georg
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