> 1. I was told that the built-in search indexes the source files, which means 
> search results often include RST markup. Is this still true?

Yes. At present, we are using source files to show search result.

Note: we have plan to fix it. It might be implemented in 2.0:
https://github.com/sphinx-doc/sphinx/issues/1618

> 2.  I was told that it's not possible with ReStructured Text markup to 
> include links in code listings. Is this true?

You can do it with parsed-literal directive. Please take a look for
the document of docutils.
(Unfortunately I can't tell you the URL because it is under maintenance now...)

Thanks,
Takeshi KOMIYA

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