root@luck:/home/Documents# alembic upgrade head
INFO  [alembic.migration] Context impl MySQLImpl.
INFO  [alembic.migration] Will assume non-transactional DDL.
INFO  [alembic.migration] Running upgrade None -> d28a086e79d
Traceback (most recent call last):
  File "/usr/local/bin/alembic", line 9, in <module>
    load_entry_point('alembic==0.4.0', 'console_scripts', 'alembic')()
  File "/usr/local/lib/python2.7/dist-packages/alembic/config.py", line 255, in 
main
    CommandLine(prog=prog).main(argv=argv)
  File "/usr/local/lib/python2.7/dist-packages/alembic/config.py", line 250, in 
main
    self.run_cmd(cfg, options)
  File "/usr/local/lib/python2.7/dist-packages/alembic/config.py", line 241, in 
run_cmd
    **dict((k, getattr(options, k)) for k in kwarg)
  File "/usr/local/lib/python2.7/dist-packages/alembic/command.py", line 124, 
in upgrade
    script.run_env()
  File "/usr/local/lib/python2.7/dist-packages/alembic/script.py", line 191, in 
run_env
    util.load_python_file(self.dir, 'env.py')
  File "/usr/local/lib/python2.7/dist-packages/alembic/util.py", line 185, in 
load_python_file
    module = imp.load_source(module_id, path, open(path, 'rb'))
  File "alembic/env.py", line 74, in <module>
    run_migrations_online()
  File "alembic/env.py", line 67, in run_migrations_online
    context.run_migrations()
  File "<string>", line 7, in run_migrations
  File "/usr/local/lib/python2.7/dist-packages/alembic/environment.py", line 
494, in run_migrations
    self.get_context().run_migrations(**kw)
  File "/usr/local/lib/python2.7/dist-packages/alembic/migration.py", line 211, 
in run_migrations
    change(**kw)
  File "alembic/versions/removelater.py", line 32, in upgrade
    mysql_ENGINE='InnoDB'
  File "<string>", line 7, in create_table
  File "/usr/local/lib/python2.7/dist-packages/alembic/operations.py", line 
574, in create_table
    self._table(name, *columns, **kw)
  File "/usr/local/lib/python2.7/dist-packages/alembic/ddl/impl.py", line 148, 
in create_table
    self._exec(schema.CreateTable(table))
  File "/usr/local/lib/python2.7/dist-packages/alembic/ddl/impl.py", line 75, 
in _exec
    conn.execute(construct, *multiparams, **params)
  File "/usr/local/lib/python2.7/dist-packages/sqlalchemy/engine/base.py", line 
664, in execute
    params)
  File "/usr/local/lib/python2.7/dist-packages/sqlalchemy/engine/base.py", line 
723, in _execute_ddl
    compiled
  File "/usr/local/lib/python2.7/dist-packages/sqlalchemy/engine/base.py", line 
878, in _execute_context
    context)
  File "/usr/local/lib/python2.7/dist-packages/sqlalchemy/engine/base.py", line 
871, in _execute_context
    context)
  File "/usr/local/lib/python2.7/dist-packages/sqlalchemy/engine/default.py", 
line 320, in do_execute
    cursor.execute(statement, parameters)
  File "/usr/lib/python2.7/dist-packages/MySQLdb/cursors.py", line 174, in 
execute
    self.errorhandler(self, exc, value)
  File "/usr/lib/python2.7/dist-packages/MySQLdb/connections.py", line 36, in 
defaulterrorhandler
    raise errorclass, errorvalue
sqlalchemy.exc.OperationalError: (OperationalError) (1005, "Can't create table 
'saintdb2.mytest1' (errno: 150)") '\nCREATE TABLE mytest1 (\n\tid INTEGER NOT 
NULL AUTO_INCREMENT, \n\tname VARCHAR(80) NOT NULL, \n\ttype_id INTEGER, 
\n\ttelephone TEXT, \n\tcontactname VARCHAR(45) NOT NULL, \n\tPRIMARY KEY (id), 
\n\tFOREIGN KEY(type_id) REFERENCES mytest (id), \n\tUNIQUE 
(name)\n)ENGINE=InnoDB DEFAULT CHARSET=ascii\n\n' ()

---
when removed foreignkey constraint, then got below:

root@luck:/home/Documents# alembic upgrade head
INFO  [alembic.migration] Context impl MySQLImpl.
INFO  [alembic.migration] Will assume non-transactional DDL.
INFO  [alembic.migration] Running upgrade None -> d28a086e79d

Hope the output is helpful for your diagnosis of my issue. Thanks a lot. 

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