> update test set ID=BucketID
> from buckets B, test T
> where B.CheckSum=T.CheckSum

Your update is logically equivalent to this pseudocode:

   for every testcs in (select checksum from test) do
      update test set id = 
         (select bucketid from buckets               
          where buckets.checksum = testcs)
      where test.checksum = testcs

You'll have to program the 'for every ...' part yourself
and insert the appropriate value of testcs into the sub-
query and where clause in the update statement. Note that
subqueries in SQLite must be self-contained; they can't
refer to anything outside themselves
(www.sqlite.org/omitted.html).

Regards

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