I have read http://sqlite.org/atomiccommit.html which seems to imply that
all db files in a transaction are locked at the same level as the
transaction progresses (i.e. all Reserved, then all Exclusive, ...). This
makes sense when all the files are being changed, but I have a use case
where I am only modifying one of the attached databases and would like to
leave the main database unlocked.

Is this supported, perhaps in a recent version (I am still using 3.4.1 :-)?

Chris
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