Comment #5 on issue 2360 by asmeurer: Bug in geometry intersection
http://code.google.com/p/sympy/issues/detail?id=2360

Well, it looks like it's been broken for a *long* time. This was the commit that broke it:

commit f51f3535a520a0499688b8535628e50e395009ac
Author: inferno1386 <devnull@localhost>
Date:   Sun Aug 19 17:38:02 2007 +0000

    - Added radsimp() to simplify.py to rationalize denominators
    - Fixed geometry module to properly handle remaining tests

Which comes from 2007, and was first included in SymPy 0.5.3. Anyway, that might give you a clue as to how to fix it.

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