Hi,
I just tried out Taverna 2.0 on Ubuntu 9.04, it gives the following warnings.
I would highly appreciate if someone can explain to me why those happen and how
to get rid of them.
27-May-2009 1:34:23 PM net.sf.taverna.raven.plugins.PluginManager ?
WARNING: Plugin net.sf.taverna.t2.all-activities:all-activities v.0.4 depends
on unknown plugin Plugin net.sf.taverna.t2.core v0.4 (by taverna.sf.net)
27-May-2009 1:34:28 PM net.sf.taverna.raven.plugins.PluginManager ?
WARNING: Plugin net.sf.taverna.t2.all-activity-uis:all-activities v.0.4 depends
on unknown plugin Plugin net.sf.taverna.t2.core v0.4 (by taverna.sf.net)
27-May-2009 1:34:28 PM net.sf.taverna.raven.plugins.PluginManager ?
WARNING: Plugin net.sf.taverna.t2.all-activities:all-activities v.0.4 depends
on unknown plugin Plugin net.sf.taverna.t2.core v0.4 (by taverna.sf.net)
27-May-2009 1:34:32 PM net.sf.taverna.raven.plugins.PluginManager ?
WARNING: Plugin
net.sf.taverna.t2.all-activity-translators:all-activity-translators v.0.4
depends on unknown plugin Plugin net.sf.taverna.t2.workbench v0.4 (by
taverna.sf.net)
27-May-2009 1:34:32 PM net.sf.taverna.raven.plugins.PluginManager ?
WARNING: Plugin
net.sf.taverna.t2.all-activity-translators:all-activity-translators v.0.4
depends on unknown plugin Plugin net.sf.taverna.t2.core v0.4 (by taverna.sf.net)
27-May-2009 1:34:32 PM net.sf.taverna.raven.plugins.PluginManager ?
WARNING: Plugin net.sf.taverna.t2.all-activities:all-activities v.0.4 depends
on unknown plugin Plugin net.sf.taverna.t2.core v0.4 (by taverna.sf.net)
27-May-2009 1:34:33 PM net.sf.taverna.raven.plugins.PluginManager ?
WARNING: Plugin net.sf.taverna.t2.credential-manager:credential-manager v.0.4
depends on unknown plugin Plugin net.sf.taverna.t2.workbench v0.4 (by
taverna.sf.net)
27-May-2009 1:34:35 PM net.sf.taverna.raven.repository.impl.LocalRepository ?
WARNING: Could not find artifact net.sf.taverna.t2.workbench:loop-ui:0.2
net.sf.taverna.raven.repository.ArtifactNotFoundException: Can't find artifact
for: net.sf.taverna.t2.workbench:loop-ui:0.2
at
net.sf.taverna.raven.repository.impl.LocalRepository.fetch(LocalRepository.java:819)
at
net.sf.taverna.raven.repository.impl.LocalRepository.act(LocalRepository.java:536)
at
net.sf.taverna.raven.repository.impl.LocalRepository.update(LocalRepository.java:490)
at
net.sf.taverna.raven.plugins.PluginManager.addPlugin(PluginManager.java:225)
at
net.sf.taverna.raven.plugins.PluginManager.initializePlugins(PluginManager.java:769)
at net.sf.taverna.raven.plugins.PluginManager.<init>(PluginManager.java:157)
at
net.sf.taverna.raven.plugins.PluginManager.getInstance(PluginManager.java:168)
at net.sf.taverna.raven.launcher.Launcher.findMainClass(Launcher.java:101)
at net.sf.taverna.raven.launcher.Launcher.launchMain(Launcher.java:130)
at net.sf.taverna.raven.launcher.Launcher.main(Launcher.java:64)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
net.sf.taverna.raven.prelauncher.PreLauncher.runLauncher(PreLauncher.java:115)
at
net.sf.taverna.raven.prelauncher.PreLauncher.launchArgs(PreLauncher.java:69)
at net.sf.taverna.raven.prelauncher.PreLauncher.main(PreLauncher.java:47)
INFO 2009-05-27 13:34:43,028
(net.sf.taverna.t2.workbench.ui.impl.Workbench:239) - Using default Look and
Feel
INFO 2009-05-27 13:34:46,183
(net.sf.taverna.t2.activities.wsdl.query.WSDLQuery:51) - About to parse
wsdl:http://www.ebi.ac.uk/xembl/XEMBL.wsdl
INFO 2009-05-27 13:34:46,271
(net.sf.taverna.t2.activities.wsdl.query.WSDLQuery:51) - About to parse
wsdl:http://soap.genome.jp/KEGG.wsdl
INFO 2009-05-27 13:34:46,279
(net.sf.taverna.t2.activities.wsdl.query.WSDLQuery:51) - About to parse
wsdl:http://eutils.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl
INFO 2009-05-27 13:34:46,308
(net.sf.taverna.t2.activities.wsdl.query.WSDLQuery:51) - About to parse
wsdl:http://soap.bind.ca/wsdl/bind.wsdl
INFO 2009-05-27 13:34:46,363
(net.sf.taverna.t2.activities.wsdl.query.WSDLQuery:51) - About to parse
wsdl:http://www.ebi.ac.uk/ws/services/urn:Dbfetch?wsdl
WARN 2009-05-27 13:34:46,616 (org.apache.axis.utils.JavaUtils:1308) - Unable
to find required classes (javax.activation.DataHandler and
javax.mail.internet.MimeMultipart). Attachment support is disabled.
INFO 2009-05-27 13:34:48,809
(net.sf.taverna.t2.activities.wsdl.query.WSDLQuery:98) - Finished parsing
WSDL:http://www.ebi.ac.uk/ws/services/urn:Dbfetch?wsdl
INFO 2009-05-27 13:34:48,820
(net.sf.taverna.t2.activities.wsdl.query.WSDLQuery:98) - Finished parsing
WSDL:http://soap.bind.ca/wsdl/bind.wsdl
INFO 2009-05-27 13:34:48,820
(net.sf.taverna.t2.activities.wsdl.query.WSDLQuery:98) - Finished parsing
WSDL:http://www.ebi.ac.uk/xembl/XEMBL.wsdl
INFO 2009-05-27 13:34:49,422
(net.sf.taverna.t2.activities.wsdl.query.WSDLQuery:98) - Finished parsing
WSDL:http://soap.genome.jp/KEGG.wsdl
WARN 2009-05-27 13:34:50,426
(net.sf.taverna.t2.ui.menu.impl.MenuManagerImpl:354) - No sub components found
for section http://taverna.sf.net/2008/t2workbench/menu#graphSaveMenuSection
WARN 2009-05-27 13:34:50,490
(net.sf.taverna.t2.ui.menu.impl.MenuManagerImpl:359) - Separator found within
section
WARN 2009-05-27 13:34:50,490
(net.sf.taverna.t2.ui.menu.impl.MenuManagerImpl:359) - Separator found within
section
WARN 2009-05-27 13:34:50,490
(net.sf.taverna.t2.ui.menu.impl.MenuManagerImpl:359) - Separator found within
section
INFO 2009-05-27 13:34:51,014
(net.sf.taverna.t2.workbench.models.graph.svg.SVGUtil:71) - Using XML parser
null
INFO 2009-05-27 13:34:51,651
(net.sf.taverna.t2.workbench.configuration.ConfigurationManager:79) - Storing
configuration for Workbench to
/home/fan/.taverna-2.0/conf/Workbench-c14856f0-5967-11dd-ae16-0800200c9a66.config
INFO 2009-05-27 13:35:31,916
(net.sf.taverna.t2.activities.wsdl.query.WSDLQuery:98) - Finished parsing
WSDL:http://eutils.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl
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