Hi Alan, Stian, Marco and I have come up against the same problem (same exact error messages) while preparing for a Taverna tutorial tomorrow morning. We get it with different jvm's. One possible clue is that we have had to point Taverna at different jvm's than what is on the path. In one case, I modified an environment variable. In another case, Marco modified the PATH in the runme.sh. Could the Raven load/launch be finding the wrong jvm (v1.4.2) in spite of our PATH modifications?
Cheers, Scott Jorge Soares wrote: > Hi Alan, > > What kind of details do you need exactly? > > > My JRE version is: > > djo...@tikki[djodja] java -version > [10:57AM] > java version "1.6.0_07" > Java(TM) SE Runtime Environment (build 1.6.0_07-b06) > Java HotSpot(TM) Client VM (build 10.0-b23, mixed mode, sharing) > > > After downloading Taverna, i chmod'ed the whole directory, I ran taverna > from a > terminal (sh runme.sh). > This is the output i got while Taverna was loading: > > djo...@tikki[taverna-1.7.1] sh runme.sh [11:14AM] > 21-May-2009 11:15:01 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact saxpath:saxpath:1.0-FCS > 21-May-2009 11:15:02 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact xerces:xercesImpl:2.6.2 > 21-May-2009 11:15:03 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact javax.xml.stream:stax-api:1.0-2 > 21-May-2009 11:15:04 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact log4j:log4j:1.2.12 > 21-May-2009 11:15:04 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact jaxen:jaxen:1.0-FCS > 21-May-2009 11:15:05 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact com.sun.xml.bind:jaxb-impl:2.0.3 > 21-May-2009 11:15:06 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact dom4j:dom4j:1.6 > 21-May-2009 11:15:07 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact javax.xml.bind:jaxb-api:2.0 > 21-May-2009 11:15:11 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact javax.activation:activation:1.1 > 21-May-2009 11:15:12 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact > commons-vfs:commons-vfs:20041214060500 > 21-May-2009 11:15:13 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact > commons-httpclient:commons-httpclient:3.0-rc4 > 21-May-2009 11:15:14 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact xerces:xmlParserAPIs:2.2.1 > 21-May-2009 11:15:15 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact xerces:xercesImpl:2.7.1 > 21-May-2009 11:15:15 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact commons-io:commons-io:1.3.1 > 21-May-2009 11:15:16 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact batik:batik-util:1.6-1 > 21-May-2009 11:15:17 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact axis:axis-saaj:1.3 > 21-May-2009 11:15:18 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact net.sourceforge.jena:jena:2.3 > 21-May-2009 11:15:18 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact javax.mail:mail:1.4 > 21-May-2009 11:15:19 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact bsf:bsf:2.3.0 > 21-May-2009 11:15:20 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact groovy:groovy-all:1.0-beta-9 > 21-May-2009 11:15:21 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact axis:axis-jaxrpc:1.3 > 21-May-2009 11:15:22 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact commons-io:commons-io:1.3 > 21-May-2009 11:15:22 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact org.beanshell:bsh:2.0b4 > 21-May-2009 11:15:23 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact jacl:jacl:1.2.6 > 21-May-2009 11:15:24 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact rhino:js:1.6R1 > 21-May-2009 11:15:25 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact mysql:mysql-connector-java:5.0.5 > 21-May-2009 11:15:25 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact commons-net:commons-net:1.1.0 > 21-May-2009 11:15:26 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact log4j:log4j:1.2.13 > 21-May-2009 11:15:27 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact commons-io:commons-io:1.2 > 21-May-2009 11:15:28 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact jython:jython:2.1 > 21-May-2009 11:15:29 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact velocity:velocity:1.3 > 21-May-2009 11:15:30 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact batik:batik-svg-dom:1.6-1 > 21-May-2009 11:15:30 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact batik:batik-swing:1.6-1 > 21-May-2009 11:15:31 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact xml-apis:xml-apis:1.3.02 > 21-May-2009 11:15:32 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact jdom:jdom:1.0 > 21-May-2009 11:15:36 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact bsh:bsh:2.0b1 > 21-May-2009 11:15:38 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact wsdl4j:wsdl4j:1.5.1 > 21-May-2009 11:15:41 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact > commons-discovery:commons-discovery:0.2 > 21-May-2009 11:15:43 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact jmimemagic:jmimemagic:0.1.1 > 21-May-2009 11:15:44 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact > commons-logging:commons-logging:1.0.4 > 21-May-2009 11:15:45 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact > commons-httpclient:commons-httpclient:3.1 > 21-May-2009 11:15:45 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact > commons-httpclient:commons-httpclient:3.0 > 21-May-2009 11:15:46 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact commons-lang:commons-lang:2.2 > 21-May-2009 11:15:47 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact > javax.persistence:persistence-api:1.0 > 21-May-2009 11:15:49 > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact poi:poi-2.0-final:20040126 > Could not launch Raven: you should check you have network access. > djo...@tikki[taverna-1.7.1] > > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > > > This is essentially all I have. If you need more details on my machine, let > me know. > > Best, > > Jorge > > On Fri, May 22, 2009 at 12:47 PM, Alan Williams <[email protected]> wrote: > >> Hello, >> >> Can you give more details of the error you get? >> >> Alan >> >> >> ------------------------------------------------------------------------------ >> Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT >> is a gathering of tech-side developers & brand creativity professionals. >> Meet >> the minds behind Google Creative Lab, Visual Complexity, Processing, & >> iPhoneDevCamp asthey present alongside digital heavyweights like Barbarian >> Group, R/GA, & Big Spaceship. http://www.creativitycat.com >> _______________________________________________ >> taverna-users mailing list >> [email protected] >> [email protected] >> Web site: http://www.taverna.org.uk >> Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ >> > > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------------ > Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT > is a gathering of tech-side developers & brand creativity professionals. Meet > the minds behind Google Creative Lab, Visual Complexity, Processing, & > iPhoneDevCamp asthey present alongside digital heavyweights like Barbarian > Group, R/GA, & Big Spaceship. http://www.creativitycat.com > > > ------------------------------------------------------------------------ > > _______________________________________________ > taverna-users mailing list > [email protected] > [email protected] > Web site: http://www.taverna.org.uk > Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ ------------------------------------------------------------------------------ Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT is a gathering of tech-side developers & brand creativity professionals. Meet the minds behind Google Creative Lab, Visual Complexity, Processing, & iPhoneDevCamp as they present alongside digital heavyweights like Barbarian Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/
