On Fri, Dec 11, 2009 at 16:05, <[email protected]> wrote: > i have the executeworkflow.sh in a directory lets say "tavernaFolder" and I > have a workflow that is in a folder "workflows". I also have a folder called > "workflowOutputs". I would like to execute the workflow and direct the final > outputs to be put in the "workflowOutputs" folder. What's happening now is > that the output files are placed where the executor is which is in this case > is "tavernaFolder". the workflow runs fine without any issues. > > By the way, this is running in Linux. > > ./executeworkflow.sh -input InputFile1 file:workflowInputs/Input_1.txt > workflows/workflow.xml > I tried to add " -output workflowOutputs" (without the " ) to my command > line but that didn't work.
As long as you don't include the quotes, I believe it should work: PS C:\Users\stain\12> & 'C:\Program Files (x86)\Taverna Workbench 1.7.2\executeworkflow.bat' .\workflows\workflow.xml -input in file:.\workflowInputs\hello.txt -output workflowOutputs PS C:\Users\stain\12> cat .\workflowOutputs\out\0 hello PS C:\Users\stain\12> cat .\workflowOutputs\out\1 edit me! Dummy workflow attached.. -- Stian Soiland-Reyes, myGrid team School of Computer Science The University of Manchester
<?xml version="1.0" encoding="UTF-8"?> <s:scufl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"; version="0.2" log="0"> <s:workflowdescription lsid="urn:lsid:net.sf.taverna:wfDefinition:cc1cf2f8-3d37-4ad7-98ae-5520251d5de6" author="" title="aa" /> <s:processor name="test" boring="true"> <s:stringconstant>edit me!</s:stringconstant> </s:processor> <s:link source="in" sink="out" /> <s:link source="test:value" sink="out" /> <s:source name="in" /> <s:sink mode="merge" name="out" /> </s:scufl>
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