Hello, I'll look into this for you. It should be fairly straight forward, using taxonomy as the DB from NCBI. Alternatively, you can always use BioMart from Taverna. Instead of specifying a taxa, you simply connect to the species database of choice and get the Ensembl (or whatever) ids you want.
regards, Paul. > > I am new to Taverna. I have easily found several web services > available that allow me to get a sequence from an accession number. > Most examples I have seen deal with an existing accession number > list. But first, I would like to query genbank with the name of a > taxa and get back a list of accession numbers for that taxa preferably > in XML so that I can run xpath queries on it. Then, the next step of > my workflow could get the sequences from this list of accession > numbers. Are there any services out there that will give me a list of > all accession numbers for a particular taxa or a particular gene or both? > ------------------------------------------------------------------------------ The Planet: dedicated and managed hosting, cloud storage, colocation Stay online with enterprise data centers and the best network in the business Choose flexible plans and management services without long-term contracts Personal 24x7 support from experience hosting pros just a phone call away. http://p.sf.net/sfu/theplanet-com _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/
