Hi I am trying to create a workflow where i am trying to write the output
into a txt file.Its not giving any error.But i am unable to find
the txt file in the location i gave (as file:///C:/jiangtaverna). Ineeded
some suggestions on where i am doing something wrong.Also wanted to ask how am
i going to name the output file.My inputs were:
file:file:///C:/jiangtaverna PDBid:1J47Best RegardsRinku
<?xml version="1.0" encoding="UTF-8"?>
<s:scufl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"; version="0.2" log="0">
<s:workflowdescription lsid="urn:lsid:net.sf.taverna:wfDefinition:6569c373-43cf-4539-b24f-88a4fdc7a5b3" author="" title="writingtextfile" />
<s:processor name="Write_Text_File">
<s:local>net.sourceforge.taverna.scuflworkers.io.TextFileWriter</s:local>
</s:processor>
<s:processor name="hsapiens_gene_ensembl">
<s:description>Homo sapiens genes (GRCh37)</s:description>
<s:biomart>
<biomart:MartQuery xmlns:biomart="http://org.embl.ebi.escience/xscufl-biomart/0.1alpha";>
<biomart:MartService location="http://www.biomart.org/biomart/martservice"; />
<biomart:MartDataset displayName="Homo sapiens genes (GRCh37)" name="hsapiens_gene_ensembl" type="TableSet" initialBatchSize="200" maximumBatchSize="50000" visible="false" interface="default" modified="2010-03-08 14:50:08">
<biomart:MartURLLocation database="ensembl_mart_57" default="1" displayName="ENSEMBL GENES 57 (SANGER UK)" host="www.biomart.org" includeDatasets="" martUser="" name="ensembl" path="/biomart/martservice" port="80" serverVirtualSchema="default" virtualSchema="default" visible="1" redirect="0" />
</biomart:MartDataset>
<biomart:Query virtualSchemaName="default" count="0" uniqueRows="0" softwareVersion="0.7" requestId="taverna">
<biomart:Dataset name="hsapiens_gene_ensembl">
<biomart:Attribute name="entrezgene" />
<biomart:Filter name="embl" value="" list="true" />
</biomart:Dataset>
</biomart:Query>
</biomart:MartQuery>
</s:biomart>
</s:processor>
<s:link source="emblid" sink="hsapiens_gene_ensembl:hsapiens_gene_ensembl.embl_filter" />
<s:link source="file" sink="Write_Text_File:outputFile" />
<s:link source="Write_Text_File:outputFile" sink="out" />
<s:link source="hsapiens_gene_ensembl:hsapiens_gene_ensembl.entrezgene" sink="Write_Text_File:filecontents" />
<s:source name="file" />
<s:source name="emblid" />
<s:sink name="out" />
</s:scufl>
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