Hi Mikołaj
Maybe you should check back some discussions on this list; your question
may relate to discussions about Taverna moving to Java 6 which supports
script languages.
For perl I know there is SOAPlab. I'm not an expert, but it makes it
easier to wrap (perl) scripts as Web Services, such that you can use it
in Taverna.
Furthermore, I believe Morris Swertz and his group are working on
general solutions to use scripts and command line tools in other
frameworks including Taverna. Also check out their MolGenis tool.
The real experts may give you more details, but they might all be on
holiday ;-)
Cheers,
Marco.
On 04/08/10 14:47, Mikołaj Rybiński wrote:
Hi Marco,
2010/8/4 Marco Roos<[email protected]>:
Hi Mikołaj
I am not sure what you mean exactly. If you want to know if it is possible
to have a beanshell script within a nested workflow then the answer is yes;
I have that many times both in Taverna 1 and 2, and also in deeply nested
workflows.
I mean having an external Beanshell script file (e.g. foo.bsh) and add
it as an Beanshell processor in Taverna (e.g. doFoo) such that its'
code is not contained in workflow XML file but referenced there like
'xscufllocation' tag references nested workflow in SCUFL (e.g.
pointing to file:///my/workspace/foo.bsh).
Zdrówka,
Mikołaj
Cheers,
Marco.
On 04/08/10 14:04, Mikołaj Rybiński wrote:
Hi,
is it possible to have Beanshell script file nested in Taverna workflow?
Note 1: I'm still using Taverna 1.7 so I'm interested in SCUFL but if
it's possible for T2FLOW please let me know too.
Note 2: Such functionality would be convenient for workflow development.
Best regards,
Mikołaj
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--
Marco Roos (PhD) <http://home.medewerker.uva.nl/m.roos1>
*BioSemantics group* <http://www.biosemantics.nl>, Human Genetics
department <http://www.humgen.nl>, Leiden University Medical Centre
<http://www.lumc.nl>
Albinusdreef 2 (Building 2, room S3-46)
2333 ZA Leiden
Tel. +31 (0) 71 526 8642
*Adaptive Information Disclosure group*
<http://adaptivedisclosure.org/>, Informatics Institute
<http://www.science.uva.nl/ii>, University of Amsterdam <http://www.uva.nl/>
Kruislaan 403 ( room N2.30
<http://remote.science.uva.nl/%7Eroos/Kruislaan403_N230.png>) 1098 SJ
Amsterdam
Tel. +31 (0) 20 525 7522
*Communities:*
Professional: LinkedIn <http://www.linkedin.com/in/marcoroos>,
myExperiment <http://www.myexperiment.org/users/18> Personal: Hyves
<http://mroos62.hyves.nl/>
------------------------------------------------------------------------------
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Plug-In Development Kit to bring their C/C++ apps to Palm for a share
of $1 Million in cash or HP Products. Visit us here for more details:
http://p.sf.net/sfu/dev2dev-palm
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