Hi all,
I'm using Rshell to process multiple sample files. I read all files as a string
vector called "Files". It also gives number of samples with length function but
when I try to read them tab delimited for further processing, it gives me
following error for output port "temp":
[error]
org.rosuda.REngine.Rserve.RserveException: cannot open the connection
net.sf.taverna.t2.activities.rshell.RshellActivity$1.run(RshellActivity.java:217)
java.lang.Thread.run(Thread.java:662)
[error]
I'm trying very simple code:
#Files are sample files(.txt) read as string vector
Sample_length<-length(Files)
#looping through string vector and reading each sample file tab delimited
for (i in 1:24)
{
#Read in as temporary data, process it, then assign as SampleName
temp<- read.delim(Files[i], skip=13, sep=";", header=F, na.strings=NA,
fill=T)
}
I'm unable to find what causes this error. Any idea?
Thanks,
Anand
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