Hi everyone,
I'm trying to add the SADI plugin in my Taverna Workbench, but I'm not going
very well.
I'm using Linux SUSE as SO and I following the tutorial available at
sadiframework.org. The instalation, at the first time, looks like success.
But, to install completly, I need restart my taverna. When it's running
again I got the follow error and my SADI repositories don't appear/work.
------------------------
WARN 2010-11-16 16:59:07,520
(net.sf.taverna.raven.repository.impl.ArtifactImpl:85) - Unable to find a
version for the dependency junit:junit - skipping
ERROR 2010-11-16 16:59:09,579 (System.err:139) - Central class is
org.biomoby.client.CentralDigestCachedImpl
ERROR 2010-11-16 16:59:09,622 (ca.wilkinsonlab.sadi.common.Config:48) -
Cannot locate configuration source sadi.common.properties
WARN 2010-11-16 16:59:09,625 (ca.wilkinsonlab.sadi.common.Config:56) - no
user-space configuration source sadi.properties
WARN 2010-11-16 16:59:11,203
(net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl:579)
- Provider SADI http://biordf.net/sparql: Failed to find services for SADI
at http://biordf.net/sparql
ca.wilkinsonlab.sadi.common.SADIException: java.net.SocketTimeoutException:
creation failed. Max trials 3 reached. Elapsed time 946 millis (creation
timeout 20 sec). Could not connect to
biordf.net/137.82.157.228:80java.net.SocketException: Operation not
supported
at
ca.wilkinsonlab.sadi.utils.QueryExecutorFactory$VirtuosoSPARQLEndpointQueryExecutor.executeQuery(QueryExecutorFactory.java:134)
at
ca.wilkinsonlab.sadi.client.RegistryBase.executeQuery(RegistryBase.java:108)
at
ca.wilkinsonlab.sadi.client.RegistryImpl.getAllServices(RegistryImpl.java:63)
at
net.sf.taverna.t2.activities.sadi.servicedescriptions.SADIServiceProvider.findServiceDescriptionsAsync(SADIServiceProvider.java:59)
at
net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl$FindServiceDescriptionsThread.run(ServiceDescriptionRegistryImpl.java:670)
WARN 2010-11-16 16:59:13,584
(net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl:579)
- Provider SADI http://biordf.net/sparql: Failed to find services for SADI
at http://biordf.net/sparql
ca.wilkinsonlab.sadi.common.SADIException: java.net.SocketTimeoutException:
creation failed. Max trials 3 reached. Elapsed time 1127 millis (creation
timeout 20 sec). Could not connect to
biordf.net/137.82.157.228:80java.net.SocketException: Operation not
supported
at
ca.wilkinsonlab.sadi.utils.QueryExecutorFactory$VirtuosoSPARQLEndpointQueryExecutor.executeQuery(QueryExecutorFactory.java:134)
at
ca.wilkinsonlab.sadi.client.RegistryBase.executeQuery(RegistryBase.java:108)
at
ca.wilkinsonlab.sadi.client.RegistryImpl.getAllServices(RegistryImpl.java:63)
at
net.sf.taverna.t2.activities.sadi.servicedescriptions.SADIServiceProvider.findServiceDescriptionsAsync(SADIServiceProvider.java:59)
at
net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl$FindServiceDescriptionsThread.run(ServiceDescriptionRegistryImpl.java:670)
WARN 2010-11-16 16:59:18,110
(net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl:579)
- Provider SADI http://biordf.net/sparql: Failed to find services for SADI
at http://biordf.net/sparql
ca.wilkinsonlab.sadi.common.SADIException: java.net.SocketTimeoutException:
creation failed. Max trials 3 reached. Elapsed time 750 millis (creation
timeout 20 sec). Could not connect to
biordf.net/137.82.157.228:80java.net.SocketException: Operation not
supported
at
ca.wilkinsonlab.sadi.utils.QueryExecutorFactory$VirtuosoSPARQLEndpointQueryExecutor.executeQuery(QueryExecutorFactory.java:134)
at
ca.wilkinsonlab.sadi.client.RegistryBase.executeQuery(RegistryBase.java:108)
at
ca.wilkinsonlab.sadi.client.RegistryImpl.getAllServices(RegistryImpl.java:63)
at
net.sf.taverna.t2.activities.sadi.servicedescriptions.SADIServiceProvider.findServiceDescriptionsAsync(SADIServiceProvider.java:59)
at
net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl$FindServiceDescriptionsThread.run(ServiceDescriptionRegistryImpl.java:670)
ERROR 2010-11-16 16:59:21,614 (System.err:139) - Central class is
org.biomoby.client.CentralDigestCachedImpl
WARN 2010-11-16 16:59:23,240
(net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl:579)
- Provider SADI http://biordf.net/sparql: Failed to find services for SADI
at http://biordf.net/sparql
ca.wilkinsonlab.sadi.common.SADIException: java.net.SocketTimeoutException:
creation failed. Max trials 3 reached. Elapsed time 693 millis (creation
timeout 20 sec). Could not connect to
biordf.net/137.82.157.228:80java.net.SocketException: Operation not
supported
at
ca.wilkinsonlab.sadi.utils.QueryExecutorFactory$VirtuosoSPARQLEndpointQueryExecutor.executeQuery(QueryExecutorFactory.java:134)
at
ca.wilkinsonlab.sadi.client.RegistryBase.executeQuery(RegistryBase.java:108)
at
ca.wilkinsonlab.sadi.client.RegistryImpl.getAllServices(RegistryImpl.java:63)
at
net.sf.taverna.t2.activities.sadi.servicedescriptions.SADIServiceProvider.findServiceDescriptionsAsync(SADIServiceProvider.java:59)
at
net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl$FindServiceDescriptionsThread.run(ServiceDescriptionRegistryImpl.java:670)
WARN 2010-11-16 16:59:37,964
(net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl:579)
- Provider SADI http://biordf.net/sparql: Failed to find services for SADI
at http://biordf.net/sparql
ca.wilkinsonlab.sadi.common.SADIException: java.net.SocketTimeoutException:
creation failed. Max trials 3 reached. Elapsed time 838 millis (creation
timeout 20 sec). Could not connect to
biordf.net/137.82.157.228:80java.net.SocketException: Operation not
supported
at
ca.wilkinsonlab.sadi.utils.QueryExecutorFactory$VirtuosoSPARQLEndpointQueryExecutor.executeQuery(QueryExecutorFactory.java:134)
at
ca.wilkinsonlab.sadi.client.RegistryBase.executeQuery(RegistryBase.java:108)
at
ca.wilkinsonlab.sadi.client.RegistryImpl.getAllServices(RegistryImpl.java:63)
at
net.sf.taverna.t2.activities.sadi.servicedescriptions.SADIServiceProvider.findServiceDescriptionsAsync(SADIServiceProvider.java:59)
at
net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl$FindServiceDescriptionsThread.run(ServiceDescriptionRegistryImpl.java:670)
WARN 2010-11-16 17:01:25,544
(net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl:579)
- Provider SADI http://biordf.net/sparql: Failed to find services for SADI
at http://biordf.net/sparql
ca.wilkinsonlab.sadi.common.SADIException: java.net.SocketTimeoutException:
creation failed. Max trials 3 reached. Elapsed time 691 millis (creation
timeout 20 sec). Could not connect to
biordf.net/137.82.157.228:80java.net.SocketException: Operation not
supported
at
ca.wilkinsonlab.sadi.utils.QueryExecutorFactory$VirtuosoSPARQLEndpointQueryExecutor.executeQuery(QueryExecutorFactory.java:134)
at
ca.wilkinsonlab.sadi.client.RegistryBase.executeQuery(RegistryBase.java:108)
at
ca.wilkinsonlab.sadi.client.RegistryImpl.getAllServices(RegistryImpl.java:63)
at
net.sf.taverna.t2.activities.sadi.servicedescriptions.SADIServiceProvider.findServiceDescriptionsAsync(SADIServiceProvider.java:59)
at
net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl$FindServiceDescriptionsThread.run(ServiceDescriptionRegistryImpl.java:670)
------------------------------------------------------
Can anyone help me with this?
PS: In other plataform, like Win 7, it works fine "/
Thanks
--
Caio César Batista
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