I have tried connecting the ouput to some other CDK processor like
SMILES_File_Writer but it fails. That is why I thought the data wasn't read
properly.
My data files are ok, as I use them in other applications.
I have tried the SDF reader as well. It reads the data ok with no error,
but when I try to feed them into the next processor it fails. eg. SDFWriter
I know I am missing something here. Please help!
Στις 9 Απριλίου 2012 12:38 π.μ., ο χρήστης Egon Willighagen <
[email protected]> έγραψε:
> On Sun, Apr 8, 2012 at 6:02 PM, Donal K. Fellows
> <[email protected]> wrote:
> > On 08/04/2012 15:29, Kleo Achilleos wrote:
> >> I am trying to run a CDK tool SMILES_File_Reader but the output is of
> >> the form
> >
> > [...]
> >
> >> I have Windows 7 - 64, Java 6, Taverna 2.3.0 and just installed CDK.
> >
> > That looks rather like a serialized Java object. First suggestion would
> > be to feed it into another CDK service.
>
> Yes, that sounds right.
>
> Example workflows can be found on myexperiment.org
>
>
> http://www.myexperiment.org/workflows?filter=TYPE_ID%28%222%22%29+AND+TAG_ID%28%22914%22%29&query=cdk
>
> ... and found in the two CDK-Taverna papers.
>
> Egon
>
> --
> Dr E.L. Willighagen
> Postdoctoral Researcher
> Department of Bioinformatics - BiGCaT
> Maastricht University (http://www.bigcat.unimaas.nl/)
> Homepage: http://egonw.github.com/
> LinkedIn: http://se.linkedin.com/in/egonw
> Blog: http://chem-bla-ics.blogspot.com/
> PubList: http://www.citeulike.org/user/egonw/tag/papers
>
>
> ------------------------------------------------------------------------------
> For Developers, A Lot Can Happen In A Second.
> Boundary is the first to Know...and Tell You.
> Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
> http://p.sf.net/sfu/Boundary-d2dvs2
> _______________________________________________
> taverna-users mailing list
> [email protected]
> [email protected]
> Web site: http://www.taverna.org.uk
> Mailing lists: http://www.taverna.org.uk/about/contact-us/
>
------------------------------------------------------------------------------
Better than sec? Nothing is better than sec when it comes to
monitoring Big Data applications. Try Boundary one-second
resolution app monitoring today. Free.
http://p.sf.net/sfu/Boundary-dev2dev
_______________________________________________
taverna-users mailing list
[email protected]
[email protected]
Web site: http://www.taverna.org.uk
Mailing lists: http://www.taverna.org.uk/about/contact-us/
