Hi

I'm making a pipeline for aligning multiple protein sequences which is working 
fine using Emma from Soaplab.
However, I want also to get a conservation score for each column in the 
alignment, and possibly a protein structure prediction for the the individual 
sequences.

Does anybody has some suggestions to which services I can use?

Best wishes

Allan Lind-Thomsen
PhD. Student,
Phone: +045 353 27819
Wilhelm Johanssen Centre For Functional Genome Research
ICMM, University of Copenhagen

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