Hi, I was trying to run, on Windows, a workflow created on Linux. The workflow contains an external tools. Unfortunately the workflow stores the shellPrefix and linkCommand set in the Taverna Workbench used to create the workflow.
<mechanismXML><?xml version="1.0" encoding="UTF-8"?>
 <localInvocation><shellPrefix>/bin/sh -c</shellPrefix><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand></localInvocation>
 </mechanismXML> When running the workflow on Windows, Taverna can't find /bin/sh: Set of ErrorDocuments to follow. ErrorDocument 1 Processor 'extractFits' - Port 'STDOUT': java.io.IOException: Cannot run program "/bin/sh" (in directory "[...]\AppData\Local\Temp\usecase4854886647462960002dir"): CreateProcess error=2, Das System kann die angegebene Datei nicht finden de.uni_luebeck.inb.knowarc.usecases.invocation.InvocationException: java.io.IOException: Cannot run program "/bin/sh" (in directory "[...]\AppData\Local\Temp\usecase4854886647462960002dir"): CreateProcess error=2, Das System kann die angegebene Datei nicht finden de.uni_luebeck.inb.knowarc.usecases.invocation.local.LocalUseCaseInvocation.submit_generate_job_inner(LocalUseCaseInvocation.java:362) de.uni_luebeck.inb.knowarc.usecases.invocation.UseCaseInvocation.submit_generate_job(UseCaseInvocation.java:260) net.sf.taverna.t2.activities.externaltool.ExternalToolActivity$1.run(ExternalToolActivity.java:255) java.lang.Thread.run(unknown file) Is there a way to make the workflows more portable, e.g. in cases where the Windows and Linux commands are equivalent and no special shell commands are used? Cheers, Markus ------------------------------------------------------------------------------ Android apps run on BlackBerry 10 Introducing the new BlackBerry 10.2.1 Runtime for Android apps. Now with support for Jelly Bean, Bluetooth, Mapview and more. Get your Android app in front of a whole new audience. Start now. http://pubads.g.doubleclick.net/gampad/clk?id=124407151&iu=/4140/ostg.clktrk _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/about/contact-us/
