For the BioMoby clustalW services, I believe you need to construct a
'Sequence' object, but I am afraid I am not sure how to do that ("Add
Parser" only suggests output parsers for those). My best guess would
be using the "fromFastaToGenericSequence" service in front of the
input to BioMoby ClustalW.Alternatively, did you try any of these web services? https://www.biocatalogue.org/search?utf8=%E2%9C%93&q=CLUSTALW&commit= Perhaps https://www.biocatalogue.org/services/2182 is a good try - see documentation at: http://www.ebi.ac.uk/Tools/webservices/services/msa/clustalw2_soap That documentation recommends Clustal Omega instead, which I have not tried: http://www.ebi.ac.uk/Tools/webservices/services/msa/clustalo_soap On 17 June 2014 09:55, Muhammad Usama <[email protected]> wrote: > I have made a workflow which returns the FASTA of search results from ncbi > as a list. There is a Moby component for CLUSTALW but it is not accepting > list format or comma separated FASTA. > > Which component I can use to run CLUSTALW on the list that I have? > > -- > Muhammad Usama > > ------------------------------------------------------------------------------ > HPCC Systems Open Source Big Data Platform from LexisNexis Risk Solutions > Find What Matters Most in Your Big Data with HPCC Systems > Open Source. Fast. Scalable. Simple. Ideal for Dirty Data. > Leverages Graph Analysis for Fast Processing & Easy Data Exploration > http://p.sf.net/sfu/hpccsystems > _______________________________________________ > taverna-users mailing list > [email protected] > [email protected] > Web site: http://www.taverna.org.uk > Mailing lists: http://www.taverna.org.uk/about/contact-us/ > -- Stian Soiland-Reyes, myGrid team School of Computer Science The University of Manchester http://soiland-reyes.com/stian/work/ http://orcid.org/0000-0001-9842-9718 ------------------------------------------------------------------------------ HPCC Systems Open Source Big Data Platform from LexisNexis Risk Solutions Find What Matters Most in Your Big Data with HPCC Systems Open Source. Fast. Scalable. Simple. Ideal for Dirty Data. Leverages Graph Analysis for Fast Processing & Easy Data Exploration http://p.sf.net/sfu/hpccsystems _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/about/contact-us/
