Hi All, Thank you very much for your replies Alan and Jorge. I still couldn`t solve the problem. Yes I found the log messages and attached the Taverna 2.5.0 log file (some part) Now I checked http://wiki.rsg.pml.ac.uk/pywps/XMLIO and added a new type for 'buffer result' element in the pywps.wsdl. I attached the new wsdl file. Then I've imported new wsdl file to Taverna and ran the same buffer process, but it still gives same errors.
Thank you for all your helps..
Deniz
ERROR 2014-09-30 21:38:46,266 (System.err:139) -
org.biomoby.shared.MobyException: ===ERROR===
Fault details:
[stackTrace: null]
[hostname: null]
Fault string: java.net.SocketException: Permission denied: connect
Fault code: {http://schemas.xmlsoap.org/soap/envelope/}Server.userException
Fault actor: null
When calling:
http://moby.ucalgary.ca/moby/MOBY-Central.pl
===========
ERROR 2014-09-30 21:38:46,266 (System.err:139) - at
org.biomoby.client.CentralDigestCachedImpl.fillDataTypesCache(CentralDigestCachedImpl.java:257)
ERROR 2014-09-30 21:38:46,266 (System.err:139) - at
org.biomoby.client.CentralDigestCachedImpl.getDataTypes(CentralDigestCachedImpl.java:785)
ERROR 2014-09-30 21:38:46,266 (System.err:139) - at
org.biomoby.shared.MobyDataType.getDataType(MobyDataType.java:122)
ERROR 2014-09-30 21:38:46,266 (System.err:139) - at
org.biomoby.shared.MobyDataType.getParent(MobyDataType.java:264)
ERROR 2014-09-30 21:38:46,266 (System.err:139) - at
net.sf.taverna.t2.activities.biomoby.query.BiomobyQueryHelper.findDatatypeDescriptions(BiomobyQueryHelper.java:258)
ERROR 2014-09-30 21:38:46,267 (System.err:139) - at
net.sf.taverna.t2.activities.biomoby.query.BiomobyQueryHelper.findServiceDescriptionsAsync(BiomobyQueryHelper.java:221)
ERROR 2014-09-30 21:38:46,267 (System.err:139) - at
net.sf.taverna.t2.activities.biomoby.servicedescriptions.BiomobyServiceProvider.findServiceDescriptionsAsync(BiomobyServiceProvider.java:60)
ERROR 2014-09-30 21:38:46,267 (System.err:139) - at
net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl$FindServiceDescriptionsThread.run(ServiceDescriptionRegistryImpl.java:670)
ERROR 2014-09-30 21:38:46,267 (System.err:139) - Caused by:
org.biomoby.shared.MobyException: ===ERROR===
Fault details:
[stackTrace: null]
[hostname: null]
Fault string: java.net.SocketException: Permission denied: connect
Fault code: {http://schemas.xmlsoap.org/soap/envelope/}Server.userException
Fault actor: null
When calling:
http://moby.ucalgary.ca/moby/MOBY-Central.pl
===========
ERROR 2014-09-30 21:38:46,267 (System.err:139) - at
org.biomoby.client.CentralImpl.doCall(CentralImpl.java:251)
ERROR 2014-09-30 21:38:46,267 (System.err:139) - at
org.biomoby.client.CentralImpl.getResourceRefs(CentralImpl.java:1807)
ERROR 2014-09-30 21:38:46,267 (System.err:139) - at
org.biomoby.client.CentralDigestCachedImpl.getResourceURL(CentralDigestCachedImpl.java:438)
ERROR 2014-09-30 21:38:46,267 (System.err:139) - at
org.biomoby.client.CentralDigestCachedImpl.fillDataTypesCache(CentralDigestCachedImpl.java:140)
ERROR 2014-09-30 21:38:46,268 (System.err:139) - ... 7 more
ERROR 2014-09-30 21:38:46,268 (System.err:139) - Caused by:
java.net.SocketException: Permission denied: connect
ERROR 2014-09-30 21:38:46,268 (System.err:139) - at
org.apache.axis.AxisFault.makeFault(AxisFault.java:101)
ERROR 2014-09-30 21:38:46,268 (System.err:139) - at
org.apache.axis.transport.http.HTTPSender.invoke(HTTPSender.java:154)
ERROR 2014-09-30 21:38:46,268 (System.err:139) - at
org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrategy.java:32)
ERROR 2014-09-30 21:38:46,268 (System.err:139) - at
org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118)
ERROR 2014-09-30 21:38:46,268 (System.err:139) - at
org.apache.axis.SimpleChain.invoke(SimpleChain.java:83)
ERROR 2014-09-30 21:38:46,268 (System.err:139) - at
org.apache.axis.client.AxisClient.invoke(AxisClient.java:165)
ERROR 2014-09-30 21:38:46,268 (System.err:139) - at
org.apache.axis.client.Call.invokeEngine(Call.java:2784)
ERROR 2014-09-30 21:38:46,269 (System.err:139) - at
org.apache.axis.client.Call.invoke(Call.java:2767)
ERROR 2014-09-30 21:38:46,269 (System.err:139) - at
org.apache.axis.client.Call.invoke(Call.java:2443)
ERROR 2014-09-30 21:38:46,269 (System.err:139) - at
org.apache.axis.client.Call.invoke(Call.java:2366)
ERROR 2014-09-30 21:38:46,269 (System.err:139) - at
org.biomoby.client.CentralImpl.doCall(CentralImpl.java:247)
ERROR 2014-09-30 21:38:46,269 (System.err:139) - ... 10 more
ERROR 2014-09-30 21:38:46,269 (System.err:139) - Caused by:
java.net.SocketException: Permission denied: connect
ERROR 2014-09-30 21:38:46,269 (System.err:139) - at
java.net.DualStackPlainSocketImpl.connect0(Native Method)
ERROR 2014-09-30 21:38:46,270 (System.err:139) - at
java.net.DualStackPlainSocketImpl.socketConnect(DualStackPlainSocketImpl.java:79)
ERROR 2014-09-30 21:38:46,270 (System.err:139) - at
java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:339)
ERROR 2014-09-30 21:38:46,270 (System.err:139) - at
java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:200)
ERROR 2014-09-30 21:38:46,270 (System.err:139) - at
java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:182)
ERROR 2014-09-30 21:38:46,270 (System.err:139) - at
java.net.PlainSocketImpl.connect(PlainSocketImpl.java:172)
ERROR 2014-09-30 21:38:46,270 (System.err:139) - at
java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
ERROR 2014-09-30 21:38:46,270 (System.err:139) - at
java.net.Socket.connect(Socket.java:579)
ERROR 2014-09-30 21:38:46,270 (System.err:139) - at
java.net.Socket.connect(Socket.java:528)
ERROR 2014-09-30 21:38:46,271 (System.err:139) - at
java.net.Socket.<init>(Socket.java:425)
ERROR 2014-09-30 21:38:46,271 (System.err:139) - at
java.net.Socket.<init>(Socket.java:208)
ERROR 2014-09-30 21:38:46,271 (System.err:139) - at
org.apache.axis.components.net.DefaultSocketFactory.create(DefaultSocketFactory.java:149)
ERROR 2014-09-30 21:38:46,271 (System.err:139) - at
org.apache.axis.components.net.DefaultSocketFactory.create(DefaultSocketFactory.java:120)
ERROR 2014-09-30 21:38:46,271 (System.err:139) - at
org.apache.axis.transport.http.HTTPSender.getSocket(HTTPSender.java:191)
ERROR 2014-09-30 21:38:46,271 (System.err:139) - at
org.apache.axis.transport.http.HTTPSender.writeToSocket(HTTPSender.java:404)
ERROR 2014-09-30 21:38:46,271 (System.err:139) - at
org.apache.axis.transport.http.HTTPSender.invoke(HTTPSender.java:138)
ERROR 2014-09-30 21:38:46,271 (System.err:139) - ... 19 more
DEBUG 2014-09-30 21:38:46,277 (org.apache.axis.transport.http.HTTPSender:125) -
Enter: HTTPS
pywps.wsdl
Description: Binary data
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