>|FYI the file is copied by the line
 >|xcopy %MUSIXTEXDIR%\dvips\musix.map "%ROOT%"\dvips\config\
 >|in instmus.bat.

It's the line 

  echo p +musix.map >> "%ROOT%"\dvips\config\config.ps

that worries me.  The file config.ps says at the top:

  %% config.ps: Dvips configuration file
  %%
  %% DO NOT EDIT THIS FILE DIRECTLY! It will be overwritten.
  %%
  %% Run
  %%
  %%   initexmf --edit-config-file dvips
  %%
  %% to edit Dvips configuration parameters.

The recommended way to add a "local" map file is described here:

http://docs.miktex.org/2.9/manual/advanced.html#psfonts

updmap.cfg has a similar notice; one is supposed to use

  initexmf --edit-config-file updmap

followed by 

  initexmf --mkmaps

Bob T.
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