Follow-up Comment #2, bug #429 (project tex4ht): Hi Hilmar, as Karl and Nasser said, there is no cleanup performed by htlatex or other tex4ht scripts by default. The auxilary files are in fact quite important for the correct conversion, so it is not a good idea to delete them after every compilation. For example some complex tables may need more than three compilations by LaTeX to correctly resolve the structure, so you would never get a correct result with removed aux files.
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