Follow-up Comment #7, bug #647 (project tex4ht):
Well, this is significant difference. KOMA redefines \@startsection, so it
needs a special configuration too. Here is the updated .cfg file:
\Preamble{xhtml}
\makeatletter
\catcode`\:=11
\def\@startsection#1{\ifvmode\HCode{}\IgnorePar\fi\@ifstar{\Configure{secType}{like#1}}%
{\Configure{secType}{#1}}%
\:Sc1\:startsection{#1}}%
\newcommand*\scr:startsection[6]{\ifvmode\HCode{}\IgnorePar\fi\o:scr@startsection:{#1}{#2}{#3}{#4}{#5}{#6}}
\HLet\scr@startsection\scr:startsection
\catcode`\:=12
\makeatother
\begin{document}
\EndPreamble
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