Rob
A couple of things to check.

>They are linked by UTM entrance coordinates.
>I tried to make a KML file and got the error message:
                georeferenced -- unable to export KML file
>The fixed points is in the surveys (.th file with distance, compass, cline
data) that contain the respective entrances.

Make sure the surveys with fixed points have the coordinate system set,
otherwise you are just specifying an arbitrary coordinate system as far as
Therion is concerned.
ie 
      cs EPSG:2193 # or UTM or whatever you are using.

And then each centreline will need to have a date defined, so that Therion
can determine the magnetic declination for each survey.
ie
        date 2015.04.18


As an added touch you can specify the coordinate system for outputs in the
thconfig file like this

...
  legend on
endlayout
 cs EPSG:27200
export map -fmt xvi -layout GloryOle -o GloryOle.xvi
...

ie you can use a variety of input coordinate systems, and specifically
generate outputs in any (relevant) coordinate system all within the same
dataset.

See the Therion Book page 14

Bruce


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