I built a small form factor PC using the Intel D525.
http://ark.intel.com/products/49490/Intel-Atom-processor-D525-%281M-Cache-1_80-GHz%29
If you look at the features (or lack thereof!), it lacks "turbo boost" and "enhanced Intel Speed Step technology". So you may not have to resort to using a uP if you don't want the PC clock to be a moving target. I was a bit surprised that the Atoms (at least to that generation) didn't play clock and core voltage games.
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