> Or have I misunderstood what you were saying?

But what happens if, over a day, your DUT 1PPS wanders ahead and/or beyond the 
REF 1PPS? This is common with GPS 1PPS boards or with too-accurate house 1PPS 
references or when comparing poor quartz with a GPSDO.

One symptom is that all your TI numbers look positive and right, but the 
*measurement interval* subtly changes from one clean measurement every 1 second 
to one clean measurement every 2 seconds. This kind of raw data is hard to 
process with standard time/frequency stability tools, because they expect tau 
to be constant.

The solution is either a time-stamping counter, or to deliberately offset the 
DUT or REF by enough microseconds to avoid any sign changes in TIC measurements 
ever. I'm curious if you've discovered a reliable third alternative.

Without reproducing your ARM/START/STOP scenario here myself, it sort of sounds 
like you're moving the start ahead in time. True, this will give nice valid 
positive TI measurements but your consistent tau is now silently corrupted.

/tvb

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