I set up 2.6.32-5-amd64 and tested.

# cat /proc/version
Linux version 2.6.32-5-amd64 (Debian 2.6.32-44) ([email protected]) (gcc version 
4.3.5 (Debian 4.3.5-4) ) #1 SMP Sat May 5 01:12:59 UTC 2012



If /etc/tomoyo/profile.conf exists, it boots normally.

  [    3.131467] PM: Resume from disk failed.
  [    3.170967] kjournald starting.  Commit interval 5 seconds
  [    3.171366] EXT3-fs: mounted filesystem with ordered data mode.
  [    3.367417] Calling /sbin/tomoyo-init to load policy. Please wait.
  [    3.581394] TOMOYO: 2.2.0   2009/04/01
  [    3.581706] Mandatory Access Control activated.
  [    4.204435] udev[348]: starting version 164
  [    4.337875] input: Sleep Button as 
/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0E:00/input/input2



If /etc/tomoyo/ exists but /etc/tomoyo/profile.conf does not exist,
it waits for your input.

  Begin: Running /scripts/local-premount ... [    4.357857] PM: Starting manual 
resume from disk
  done.
  [    4.421423] kjournald starting.  Commit interval 5 seconds
  Begin: Running /scripts/local-bo[    4.421438] EXT3-fs: mounted filesystem 
with ordered data mode.
  ttom ... done.
  done.
  Begin: Running /scripts/init-bottom ... done.
  [    4.659015] Calling /sbin/tomoyo-init to load policy. Please wait.
  TOMOYO Linux: Default profile doesn't exist.
  TOMOYO Linux: Select a profile from the following list.
  disable
  > [  242.088493] INFO: task run-init:1 blocked for more than 120 seconds.
  [  242.091267] "echo 0 > /proc/sys/kernel/hung_task_timeout_secs" disables 
this message.
  [  242.095012] run-init      D 0000000000000000     0     1      0 0x00000000
  [  242.098145]  ffffffff814891f0 0000000000000082 0000000000000000 
ffffffff814bca40
  [  242.102846]  0000001000000000 ffff88001f9454c0 000000000000f9e0 
ffff88001f93ffd8
  [  242.106357]  0000000000015780 0000000000015780 ffff88001f940000 
ffff88001f9402f8
  [  242.111248] Call Trace:
  [  242.112379]  [<ffffffff812fbe2d>] ? schedule_timeout+0x2e/0xdd
  [  242.114909]  [<ffffffff8104a45a>] ? try_to_wake_up+0x289/0x29b
  [  242.117671]  [<ffffffff812fbce4>] ? wait_for_common+0xde/0x15b
  [  242.121169]  [<ffffffff8104a46c>] ? default_wake_function+0x0/0x9
  [  242.123556]  [<ffffffff81060562>] ? call_usermodehelper_exec+0x81/0xc6
  [  242.126537]  [<ffffffff81169228>] ? tomoyo_load_policy+0xdb/0x15f
  [  242.129284]  [<ffffffff810d0f3d>] ? insert_vm_struct+0xc3/0xd5
  [  242.133091]  [<ffffffff8116a9a0>] ? tomoyo_bprm_set_creds+0x32/0x47
  [  242.135555]  [<ffffffff810f4125>] ? prepare_binprm+0xb8/0xe3
  [  242.138165]  [<ffffffff810f4b9d>] ? do_execve+0x15a/0x2c3
  [  242.140320]  [<ffffffff8100f500>] ? sys_execve+0x35/0x4c
  [  242.143602]  [<ffffffff81010f9a>] ? stub_execve+0x6a/0xc0



So, the reason you got

  TOMOYO Linux: Default profile doesn't exist.
  TOMOYO Linux: Select a profile from the following list.
  disable
  > 

prompt is because /etc/tomoyo/profile.conf was deleted by some reason.

Excuse me, I don't know bugs in tomoyo-tools that accidentaly deletes
/etc/tomoyo/profile.conf .
I have no idea what action deleted /etc/tomoyo/profile.conf .

Regards.

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