Hi Holger, Ahh, Sesame doesn't support Generalized RDF so those cases would need to be filtered out if they come out of a Jena Model where it is supported.
Thanks, Peter On 24 March 2015 at 11:58, Holger Knublauch <[email protected]> wrote: > Hi Peter, > > I do remember that we introduced a work-around to such a scenario (literal > as predicate) 3 years ago, by adding > > // Return no results if subject is a Literal or predicate is not a > URI > // (this may happen in SPARQL queries) > if(subject instanceof Literal || (predicate != null && !(predicate > instanceof URI))) { > return new NiceIterator<Triple>(); > } > > in the TopBraid RepositoryGraph.graphBaseFind mentioned in the stack trace > below. At this stage I cannot see how it could possibly still place a > literal as predicate into an SPO query, so I can only speculate that this > may be data living on the database. > > Thanks > Holger > > > > > On 3/24/2015 9:41, Peter Ansell wrote: >> >> Hi Scott, >> >> Definitely file a bug with Sesame (and assign to me) if you have >> testcases where the Rio parsers have bugs. >> >> Thanks, >> >> Peter >> >> On 24 March 2015 at 09:55, Scott Henninger <[email protected]> >> wrote: >>> >>> Hello, Rich; Is it the case that the names of some of your property URIs >>> start with numbers, such as <http://example.org/4321>? In the past we >>> have >>> found that while this causes no problems in TopBraid and other back-ends, >>> it >>> can parse this in Sesame as: >>> <http://example.org/> "4321"^^xsd:string >>> >>> If you could check whether this is the case, we can take a closer look >>> for >>> how to address the problem. >>> >>> -- Scott >>> >>> >>> On 3/23/2015 12:15 PM, Rich Keller wrote: >>> >>> I am having trouble creating a Sesame 2 repository connection with TBC-SE >>> v4.6.2. When I establish the connection, I get a popup error window >>> saying >>> ‘unexpected error’, but the window is visible only for a second so I >>> can’t >>> make out any details. In the log, the following error is reported: >>> >>> !ENTRY org.topbraid.eclipsex 4 0 2015-03-23 09:57:03.571 >>> !MESSAGE ERROR [Thread-16] (ParseErrorLogger.java:32) - [Rio fatal] >>> Illegal >>> predicate value: "4"^^<http://www.w3.org/2001/XMLSchema#integer> (573510, >>> -1) >>> >>> So apparently a literal is being parsed in the position of a predicate. >>> The >>> full log message is below. I don’t understand what queries TBC sends to >>> Sesame or exactly what is being parsed when this error appears (in line >>> 573510, so it seems). This makes it difficult to debug. Any suggestions? >>> >>> Thanks, >>> Rich >>> >>> ———————————————————————— >>> >>> !ENTRY org.topbraid.eclipsex 4 0 2015-03-23 09:57:03.571 >>> !MESSAGE ERROR [Thread-16] (ParseErrorLogger.java:32) - [Rio fatal] >>> Illegal >>> predicate value: "4"^^<http://www.w3.org/2001/XMLSchema#integer> (573510, >>> -1) >>> >>> >>> !ENTRY org.topbraid.sesame2 2 0 2015-03-23 09:57:04.043 >>> !MESSAGE Error reported from Sesame >>> !STACK 0 >>> org.openrdf.repository.RepositoryException: Malformed query result from >>> server >>> at org.openrdf.http.client.HTTPClient.getRDF(HTTPClient.java:1169) >>> at >>> org.openrdf.http.client.HTTPClient.getStatements(HTTPClient.java:676) >>> at >>> >>> org.openrdf.repository.http.HTTPRepositoryConnection.exportStatements(HTTPRepositoryConnection.java:283) >>> at >>> >>> org.openrdf.repository.http.HTTPRepositoryConnection.getStatements(HTTPRepositoryConnection.java:269) >>> at >>> >>> org.topbraid.sesame2.graph.RepositoryGraph.graphBaseFind(RepositoryGraph.java:95) >>> at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:268) >>> at >>> >>> org.topbraid.core.graph.concurrent.ThreadSafeGraph.threadSafeFind(ThreadSafeGraph.java:250) >>> at >>> >>> org.topbraid.core.graph.concurrent.ThreadSafeGraph.find(ThreadSafeGraph.java:240) >>> at >>> org.topbraid.core.graph.CachingGraph.addToCache(CachingGraph.java:145) >>> at >>> >>> org.topbraid.core.graph.AbstractCachingGraph.find(AbstractCachingGraph.java:127) >>> at >>> >>> org.topbraid.core.graph.AbstractCachingGraph.find(AbstractCachingGraph.java:120) >>> at >>> >>> org.topbraidcomposer.core.registry.TBCCachingGraph.rebuildCache(TBCCachingGraph.java:114) >>> at >>> >>> org.topbraidcomposer.core.registry.TBCCachingGraph.<init>(TBCCachingGraph.java:46) >>> at >>> >>> org.topbraidcomposer.editors.utils.AbstractTBCPersonality.createCachingGraph(AbstractTBCPersonality.java:126) >>> at org.topbraid.core.io.IO.loadAndRegister(IO.java:322) >>> at org.topbraid.core.io.IO.load(IO.java:292) >>> at org.topbraidcomposer.core.io.TBCIO.loadModel(TBCIO.java:334) >>> at org.topbraidcomposer.core.io.TBCIO.loadModel(TBCIO.java:369) >>> at org.topbraidcomposer.core.io.TBCIO$2$1.run(TBCIO.java:420) >>> at java.lang.Thread.run(Thread.java:745) >>> Caused by: org.openrdf.rio.RDFParseException: Illegal predicate value: >>> "4"^^<http://www.w3.org/2001/XMLSchema#integer> [line 573510] >>> at >>> >>> org.openrdf.rio.helpers.RDFParserBase.reportFatalError(RDFParserBase.java:525) >>> at >>> >>> org.openrdf.rio.turtle.TurtleParser.reportFatalError(TurtleParser.java:1107) >>> at >>> org.openrdf.rio.turtle.TurtleParser.parsePredicate(TurtleParser.java:394) >>> at >>> >>> org.openrdf.rio.turtle.TurtleParser.parsePredicateObjectList(TurtleParser.java:309) >>> at >>> org.openrdf.rio.turtle.TurtleParser.parseTriples(TurtleParser.java:299) >>> at org.openrdf.rio.trig.TriGParser.parseGraph(TriGParser.java:142) >>> at >>> org.openrdf.rio.trig.TriGParser.parseStatement(TriGParser.java:89) >>> at org.openrdf.rio.turtle.TurtleParser.parse(TurtleParser.java:184) >>> at org.openrdf.rio.turtle.TurtleParser.parse(TurtleParser.java:129) >>> at org.openrdf.http.client.HTTPClient.getRDF(HTTPClient.java:1163) >>> ... 19 more >>> >>> !ENTRY org.topbraidcomposer.core 4 0 2015-03-23 09:57:04.547 >>> !MESSAGE Could not load /DW/atmonto.s2r or one of its imports. >>> The most recent URI was http://<SERVER OMITTED >>> HERE>/openrdf-sesame/repositories/atm >>> !STACK 0 >>> java.lang.reflect.InvocationTargetException >>> at org.topbraidcomposer.core.io.TBCIO$2.run(TBCIO.java:493) >>> at >>> >>> org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:121) >>> Caused by: com.hp.hpl.jena.shared.ClosedException: Sesame reports >>> org.openrdf.repository.RepositoryException: Malformed query result from >>> server (See error log for details) >>> at >>> >>> org.topbraid.sesame2.graph.RepositoryGraph.graphBaseFind(RepositoryGraph.java:100) >>> at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:268) >>> at >>> >>> org.topbraid.core.graph.concurrent.ThreadSafeGraph.threadSafeFind(ThreadSafeGraph.java:250) >>> at >>> >>> org.topbraid.core.graph.concurrent.ThreadSafeGraph.find(ThreadSafeGraph.java:240) >>> at >>> org.topbraid.core.graph.CachingGraph.addToCache(CachingGraph.java:145) >>> at >>> >>> org.topbraid.core.graph.AbstractCachingGraph.find(AbstractCachingGraph.java:127) >>> at >>> >>> org.topbraid.core.graph.AbstractCachingGraph.find(AbstractCachingGraph.java:120) >>> at >>> >>> org.topbraidcomposer.core.registry.TBCCachingGraph.rebuildCache(TBCCachingGraph.java:114) >>> at >>> >>> org.topbraidcomposer.core.registry.TBCCachingGraph.<init>(TBCCachingGraph.java:46) >>> at >>> >>> org.topbraidcomposer.editors.utils.AbstractTBCPersonality.createCachingGraph(AbstractTBCPersonality.java:126) >>> at org.topbraid.core.io.IO.loadAndRegister(IO.java:322) >>> at org.topbraid.core.io.IO.load(IO.java:292) >>> at org.topbraidcomposer.core.io.TBCIO.loadModel(TBCIO.java:334) >>> at org.topbraidcomposer.core.io.TBCIO.loadModel(TBCIO.java:369) >>> at org.topbraidcomposer.core.io.TBCIO$2$1.run(TBCIO.java:420) >>> at java.lang.Thread.run(Thread.java:745) >>> Root exception: >>> com.hp.hpl.jena.shared.ClosedException: Sesame reports >>> org.openrdf.repository.RepositoryException: Malformed query result from >>> server (See error log for details) >>> at >>> >>> org.topbraid.sesame2.graph.RepositoryGraph.graphBaseFind(RepositoryGraph.java:100) >>> at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:268) >>> at >>> >>> org.topbraid.core.graph.concurrent.ThreadSafeGraph.threadSafeFind(ThreadSafeGraph.java:250) >>> at >>> >>> org.topbraid.core.graph.concurrent.ThreadSafeGraph.find(ThreadSafeGraph.java:240) >>> at >>> org.topbraid.core.graph.CachingGraph.addToCache(CachingGraph.java:145) >>> at >>> >>> org.topbraid.core.graph.AbstractCachingGraph.find(AbstractCachingGraph.java:127) >>> at >>> >>> org.topbraid.core.graph.AbstractCachingGraph.find(AbstractCachingGraph.java:120) >>> at >>> >>> org.topbraidcomposer.core.registry.TBCCachingGraph.rebuildCache(TBCCachingGraph.java:114) >>> at >>> >>> org.topbraidcomposer.core.registry.TBCCachingGraph.<init>(TBCCachingGraph.java:46) >>> at >>> >>> org.topbraidcomposer.editors.utils.AbstractTBCPersonality.createCachingGraph(AbstractTBCPersonality.java:126) >>> at org.topbraid.core.io.IO.loadAndRegister(IO.java:322) >>> at org.topbraid.core.io.IO.load(IO.java:292) >>> at org.topbraidcomposer.core.io.TBCIO.loadModel(TBCIO.java:334) >>> at org.topbraidcomposer.core.io.TBCIO.loadModel(TBCIO.java:369) >>> at org.topbraidcomposer.core.io.TBCIO$2$1.run(TBCIO.java:420) >>> at java.lang.Thread.run(Thread.java:745) >>> >>> >>> -- >>> You received this message because you are subscribed to the Google Group >>> "TopBraid Suite Users", the topics of which include Enterprise Vocabulary >>> Network (EVN), Reference Data Manager (RDM), TopBraid Composer, TopBraid >>> Live, TopBraid Insight, SPARQLMotion, SPARQL Web Pages and SPIN. >>> To post to this group, send email to [email protected] >>> --- >>> You received this message because you are subscribed to the Google Groups >>> "TopBraid Suite Users" group. >>> To unsubscribe from this group and stop receiving emails from it, send an >>> email to [email protected]. >>> For more options, visit https://groups.google.com/d/optout. >>> >>> >>> -- >>> You received this message because you are subscribed to the Google Group >>> "TopBraid Suite Users", the topics of which include Enterprise Vocabulary >>> Network (EVN), Reference Data Manager (RDM), TopBraid Composer, TopBraid >>> Live, TopBraid Insight, SPARQLMotion, SPARQL Web Pages and SPIN. >>> To post to this group, send email to [email protected] >>> --- >>> You received this message because you are subscribed to the Google 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To post to this group, send email to [email protected] --- You received this message because you are subscribed to the Google Groups "TopBraid Suite Users" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. For more options, visit https://groups.google.com/d/optout.
