Hi Irene
You are right, it is not about the formalism itself, but about its tool 
ecosystem. I am evaluating the formalisms and all the criteria that need to 
be present to reason over clinical guidelines
Regarding SHACL: I have read about it but thought did not have support for 
temporal reasoning either. Does it?

I understand that the way to do it is move data to RDF from other data 
sets, but it is a lot of work and a lot of data, especially in the medical 
domain..Anyway I'll take a quick closer look to SHACL

Thanks and best regards,
Natalia


El sábado, 21 de octubre de 2017, 20:43:56 (UTC+2), [email protected] 
escribió:

> Hello,
>
> I am evaluating ontologies as knowledge representations of clinical 
> knowledge, where temporal reasoning is a must. I am examining both SWRL and 
> SPIN formalisms as a way to increment the expressivity of an ontology. In 
> the case of SWRL I have already taken a look to what is available and have 
> some preliminary conclusión. Now I'd like to understand if SPIN/TopBraid 
>  provides functions for temporal reasoning. If not at this stage, are there 
> plans to do so? 
>
> In my opinion ontologies are really good for holding terminological 
> knowledge (the axioms or "universal truths"), but not so good for holding 
> or maintaining lots of instances in the A-box. 
>
> For example: in SWRL the solution for temporal reasoning is to import in 
> your ontology a temporal ontology that allows asserting temporal facts in 
> the A-box and then using a built-in library from SWRL to define rules and 
> reason over temporal information. However this seems to me not a practical 
> solution as all those temporal facts are already available in external data 
> sources and it does not make sense to move all that information from a 
> hospital system's DB into an ontology A-box (think of performance for 
> example, or the difficulty of moving data from existing transactional 
> hospital systems into an ontology structure.)
>
> This leads me to the following question regarding TopBraid and SPIN: is it 
> possible to infer new knowledge using an hybrid approach, that is, 
> combining the knowledge expressed in the  T-box of the ontology and the 
> "virtual A-box" facts stated in an external database system (let's say a 
> Hospital Information System)?. If not, are there any plans of going in that 
> direction? 
>
> I ask this because ontologies and semantic web are still very much an 
> academic discipline, but its use is not so widespread in the industry. It 
> seems to me that one of the success factors would be allowing a reasoner to 
> combine expert knowledge expressed in the ontology T.box with real-world 
> data expressed in an external DB through the use of some mapping mechanism 
> (for example entities could be mapped to the T-box classes and data 
> properties to columns).
>
> I would very much appreciate any comment on these issues.
>
> Thanks in advance.
>
> Best regards,
> Natalia
>
>
>

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