The zip option on the Exports tab is much better wrt prefixes and can handle a collection and its includes all at once.
Cheers, David > On 8 Jul 2022, at 06:08, Tim Smith <smith.ts...@gmail.com> wrote: > > > Hi Holger, > > The file I referred to in the previous posting only imported EDG system > graphs so I'm confident it would not have imported additional prefixes unless > the export as Trig/import as Trig process somehow assigned/exposed this graph > to the complete set of prefixes. > > Any idea as to how I can stop this from happening? If I pull my 7.2 > workspace into 7.3 and export as a zip then import into an empty 7.3 > workspace, might that remove all of the extraneous prefixes? > > I don't know what else I can try as I have no way of debugging how the SPARQL > panel is creating the list of prefixes in 7.2 and how that relates to an > exported/imported Trig graph. > > Tim > > >> On Thu, Jul 7, 2022 at 7:16 PM Holger Knublauch <hol...@topquadrant.com> >> wrote: >> There were two prefix-related problems in the past. One was that TDB was >> sharing all prefixes between all graphs but I believe this was a >> short-lasting glitch that we were able to work around quickly. The other >> remains that TriG files only store the prefixes in a single place. So if >> you’re importing TriG then all resulting graphs will get the union of all >> prefixes. We have worked around this by (recently) introducing the ability >> to export and import .zip files where each individual file is a Turtle file >> with its own prefixes. >> >> All I can suggest is to walk through each owl:imported graph and their >> imports and check that they all only contain the minimum of prefixes. There >> has to be “leak” somewhere, i.e. an old file that got accidentally populated >> with the many prefixes, e.g. through TriG >> >> Holger >> >> >>> On 7 Jul 2022, at 7:02 pm, Tim Smith <smith.ts...@gmail.com> wrote: >>> >>> Hi Holger, >>> >>> Thanks for the help. I am correcting the prefixes via the Settings tab as >>> you mentioned. >>> >>> I had considered the impact of imports, so I went to the top of the import >>> hierarchy which is a file that imports nothing but Default Constraints for >>> EDG and the GraphQL vocabulary (system includes). This graph is one that >>> went through the trig export/import and shows all 200+ prefixes in the >>> SPARQL window. In the settings tab, I only see the prefixes you mentioned >>> above, which is what I set them to earlier today. Note that this graph >>> only contains 5 triples. The turtle export of the file is pasted below. >>> >>> As an additional test, I created a new ontology with no imports. The >>> prefixes were the EDG defaults as expected. >>> >>> For more fun, I imported the turtle file from above into the new ontology >>> and, as expected, the prefixes were not modified. >>> >>> I am at a loss as to how the graph coming from the trig import is picking >>> up the prefixes if they aren't in an imported graph and they aren't in the >>> Settings tab. >>> >>> I'll keep poking around, >>> >>> Tim >>> >>> # baseURI: http://ontologies.pg.com/pgontology >>> # imports: http://datashapes.org/graphql >>> >>> @base <http://ontologies.pg.com/pgontology> . >>> @prefix metadata: <http://topbraid.org/metadata#> . >>> @prefix teamwork: <http://topbraid.org/teamwork#> . >>> @prefix owl: <http://www.w3.org/2002/07/owl#> . >>> @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . >>> @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . >>> @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . >>> >>> <> owl:versionInfo "Created with TopBraid Composer" ; >>> metadata:status metadata:UnderDevelopmentStatus ; >>> owl:imports <http://datashapes.org/graphql> ; >>> rdf:type owl:Ontology ; >>> rdfs:label "SCHEMA_PGOntology-v1.0" . >>> >>>> On Thursday, July 7, 2022 at 3:52:49 PM UTC-4 Holger Knublauch wrote: >>>> >>>>> On 7 Jul 2022, at 3:31 pm, Tim Smith <smith...@gmail.com> wrote: >>>>> >>>>> A few weeks ago, as I shared here, I exported all graphs and imported >>>>> them into a fresh EDG Studio install to fix a Lucene indexing issue. >>>>> This caused every prefix in EDG to be assigned to every graph. (Thanks >>>>> jena!) (EDG 7.2, I know this has been addressed in 7.3) >>>>> >>>>> I am still trying to recover from this disaster. I have been slowly >>>>> going through each graph, changing the prefixes to the the correct set. >>>> >>>> I assume this was done through the Settings > Namespaces and Prefixes >>>> feature (which is the right place)? >>>> >>>>> I have also ensured the EDG-wide defaults are correct. >>>>> >>>>> However, even when creating a new Data Graph, importing an N-Triples file >>>>> (no prefixes!), ensuring that only the correct prefixes are in Settings, >>>>> I am still seeing the incorrect prefixes on forms, in the source code >>>>> panel, in the SPARQL panel, etc... >>>>> >>>>> Looking at the Source Code and SPARQL panels and expanding the prefix >>>>> twisty, I see the 200+ prefixes listed. How do I force the prefixes >>>>> listed there to reflect the EDG and graph defaults? Are the prefixes >>>>> used by these panels stored somewhere? >>>> >>>> I have just created an empty DataGraph and it produces and shows only >>>> those prefixes: >>>> >>>> PREFIX dash: <http://datashapes.org/dash#> >>>> PREFIX dc: <http://purl.org/dc/elements/1.1/> >>>> PREFIX dct: <http://purl.org/dc/terms/> >>>> PREFIX edg: <http://edg.topbraid.solutions/model/> >>>> PREFIX graphql: <http://datashapes.org/graphql#> >>>> PREFIX metadata: <http://topbraid.org/metadata#> >>>> PREFIX owl: <http://www.w3.org/2002/07/owl#> >>>> PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> >>>> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> >>>> PREFIX sh: <http://www.w3.org/ns/shacl#> >>>> PREFIX skos: <http://www.w3.org/2004/02/skos/core#> >>>> PREFIX skosxl: <http://www.w3.org/2008/05/skos-xl#> >>>> PREFIX teamwork: <http://topbraid.org/teamwork#> >>>> PREFIX test_data_graph: <http://example.org/data-graphs/Test_Data_Graph#> >>>> PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> >>>> >>>> Could it be that your data graph owl:imports a file or Ontology that >>>> defines all the other prefixes? The various panels will use the union of >>>> all prefixes from all subgraphs. Also, do the prefixes already exist >>>> before you import the N-Triples file? >>>> >>>>> >>>>> Thanks in advance for your help. This is getting super annoying. I'm >>>>> getting questions from others as to why there are "crazy" prefixes >>>>> showing up. >>>> >>>> I can sympathise with your frustration, mate. >>>> >>>> Holger >>>> >>>> >>>>> >>>>> Tim >>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google Groups >>>>> "TopBraid Suite Users" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send an >>>>> email to topbraid-user...@googlegroups.com. >>>>> To view this discussion on the web visit >>>>> https://groups.google.com/d/msgid/topbraid-users/1266198e-bf8d-4343-aa2b-cd1925839952n%40googlegroups.com. >>>> >>> >>> >>> -- >>> You received this message because you are subscribed to the Google Groups >>> "TopBraid Suite Users" group. >>> To unsubscribe from this group and stop receiving emails from it, send an >>> email to topbraid-users+unsubscr...@googlegroups.com. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/topbraid-users/2f801b6d-9a5d-4eb8-be6d-1a91bc581074n%40googlegroups.com. >> >> -- >> You received this message because you are subscribed to the Google Groups >> "TopBraid Suite Users" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to topbraid-users+unsubscr...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/topbraid-users/26CB7E07-5EDF-4C1A-847F-3F7736A9265F%40topquadrant.com. > > -- > You received this message because you are subscribed to the Google Groups > "TopBraid Suite Users" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to topbraid-users+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/topbraid-users/CAF0WbnK8MtqR_V4J0aRhrHfVsNOofpUvtdMMME6DJxgvZuO1SA%40mail.gmail.com. -- You received this message because you are subscribed to the Google Groups "TopBraid Suite Users" group. 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