We released updated openssl packages to handle that case:

http://www.ubuntu.com/usn/usn-2913-3/

What version of openssl do you have installed?
What specific site are you unable to access?

** Changed in: ca-certificates (Ubuntu)
       Status: New => Incomplete

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Touch seeded packages, which is subscribed to ca-certificates in Ubuntu.
https://bugs.launchpad.net/bugs/1551615

Title:
  Alternative chain verification failure after 1024b root CAs removal

Status in ca-certificates package in Ubuntu:
  Incomplete
Status in ca-certificates package in Debian:
  New

Bug description:
  There is now the same problem on Ubuntu 14.04 as there is currently on
  Debian 7.

  See:
  https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=812708
  https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=812488

  Gist:
  Openssl 1.0.1f can not verify certificates that have an alternative chain 
without both root certificates present. The update 20160104ubuntu0.14.04.1 
removes 1024bit certificates that are used within those chains.

  Please don't push this update to vivid too!

To manage notifications about this bug go to:
https://bugs.launchpad.net/ubuntu/+source/ca-certificates/+bug/1551615/+subscriptions

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