Did you manually run unattended-upgrade? Its supposed to be run as part
of cron which updates the package lists and then calls unattended-
upgrade.  See /usr/lib/apt/apt.systemd.daily for details.

** Changed in: unattended-upgrades (Ubuntu)
       Status: New => Incomplete

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https://bugs.launchpad.net/bugs/1603620

Title:
  Package lists are not updated before Unattended upgrades runs
  automatically.

Status in unattended-upgrades package in Ubuntu:
  Incomplete

Bug description:
  Newest kernel available currently is 4.4.0-31-generic, but

  $ linux-version list
  4.2.0-38-generic
  4.4.0-24-generic
  4.4.0-28-generic

  `apt-get dist-upgrade` does not upgrade kernel either, unless I run
  `apt-get update` first.

  I wonder why kernel was not upgraded 2016-07-16 morning.

  ProblemType: Bug
  DistroRelease: Ubuntu 16.04
  Package: unattended-upgrades 0.90
  ProcVersionSignature: Ubuntu 4.4.0-28.47-generic 4.4.13
  Uname: Linux 4.4.0-28-generic x86_64
  NonfreeKernelModules: nvidia_uvm nvidia
  ApportVersion: 2.20.1-0ubuntu2.1
  Architecture: amd64
  CurrentDesktop: XFCE
  Date: Sat Jul 16 11:40:07 2016
  EcryptfsInUse: Yes
  InstallationDate: Installed on 2015-11-21 (237 days ago)
  InstallationMedia: Xubuntu 15.10 "Wily Werewolf" - Release amd64 (20151021)
  PackageArchitecture: all
  SourcePackage: unattended-upgrades
  UpgradeStatus: Upgraded to xenial on 2016-06-24 (21 days ago)
  modified.conffile..etc.apt.apt.conf.d.10periodic:
   APT::Periodic::Update-Package-Lists "1";
   APT::Periodic::Download-Upgradeable-Packages "0";
   APT::Periodic::AutocleanInterval "0";
   APT::Periodic::Unattended-Upgrade "0";
  mtime.conffile..etc.apt.apt.conf.d.10periodic: 2016-02-15T22:39:19.560937
  mtime.conffile..etc.apt.apt.conf.d.50unattended-upgrades: 
2016-06-24T18:13:45.181749

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