Thanks for taking your time to report this issue and help making Ubuntu
better.

>From what I can see was this package version only in -proposed, it
didn't migrate to the regular release archives (possibly automatically
blocked by this issue?) There's a new upload now in -proposed,
https://bugs.launchpad.net/ubuntu/+source/fftw3/3.3.5-3, which claims to
fix a typo related to shlibs. Could you please check whether this
resolves your issue or if it is an unrelated problem?

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https://bugs.launchpad.net/bugs/1654707

Title:
  Cant upgrade: "add stricter shlib dependencies " ends with supposed
  broken dependencies

Status in fftw3 package in Ubuntu:
  New

Bug description:
  The upgrade to 3.3.5-2 is impossible: warns about broken dependecies,
  but they are not identified.

  fftw3 (3.3.5-2) unstable; urgency=medium

    * add stricter shlib dependencies for partial upgrades (Closes: #849593)
    * mark libfft3-mpi-dev m-a same and libfftw3-doc m-a foreign

   -- Julian Taylor <jtaylor.deb...@googlemail.com>  Fri, 06 Jan 2017
  18:44:49 +0100

  Looks like that " add stricter shlib dependencies for partial upgrades
  " is the root cause of the upgrade failure.

  ProblemType: Bug
  DistroRelease: Ubuntu 17.04
  Package: libfftw3-double3 3.3.5-1
  ProcVersionSignature: Ubuntu 4.9.0-11.12-generic 4.9.0
  Uname: Linux 4.9.0-11-generic x86_64
  NonfreeKernelModules: nvidia_uvm nvidia_drm nvidia_modeset nvidia
  ApportVersion: 2.20.4-0ubuntu1
  Architecture: amd64
  CurrentDesktop: GNOME
  Date: Sat Jan  7 06:02:28 2017
  Dependencies:
   gcc-6-base 6.3.0-2ubuntu1
   libc6 2.24-7ubuntu2
   libgcc1 1:6.3.0-2ubuntu1
   libgomp1 6.3.0-2ubuntu1
  SourcePackage: fftw3
  UpgradeStatus: No upgrade log present (probably fresh install)

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