It may not be flatpak on its own, but the machine I installed (and later
removed and purged) flatkpak on this problem exists. (So a correlation
does seem to exist) It might have something to do with other PPAs or how
packages you install from external PPAs affect the system. The only
major changes I made with the system around the time this happened was
installing flatpak (and monodevelop through it), wine updating to 2.11
staging, and some retroarch cores updating. Also it might be worth
looking into how exactly the gnome-keyring-daemon is started on login to
see if there is a manual edit to some file that could resolve this
issue. Sadly I don't have much else to offer other than that I am using
Xubuntu 16.04.2 and have decided that the best temporary fix is to just
enter my password in a second time by automatically starting the keyring
daemon on startup.

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You received this bug notification because you are a member of Ubuntu
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https://bugs.launchpad.net/bugs/1689825

Title:
  gnome-keyring not unlocked on boot

Status in chromium-browser package in Ubuntu:
  Invalid
Status in flatpak package in Ubuntu:
  Invalid
Status in gdm package in Ubuntu:
  Confirmed
Status in gnome-keyring package in Ubuntu:
  Confirmed
Status in libgnome-keyring package in Ubuntu:
  Confirmed
Status in lightdm package in Ubuntu:
  Confirmed

Bug description:
  1) Release: 16.04.2
  2) gnome-keyring: 3.18.3-0ubuntu2
  3) Login. gnome-keyring unlocks "login" features including for google chrome
  4) gnome-keyring is not unlocked, chrome takes 2 minutes to open and with no 
secure password features(sync) functioning.

  For the past couple days, chrome on Ubuntu 16.04 takes a REALLY long
  time (maybe 2 minutes) to start. Once chrome is started, I am not able
  to sync and any secure password features are broken. I found out this
  is due to gnome-keyring not being unlocked at login. There's also no
  way to unlock the "login" portion of the keyring from the running
  daemon by default. I have to kill the gnome-keyring process and start
  without "--login" as a parameter. Then the "login" section shows up
  which I'm able to unlock. From there chrome starts up instantly but
  asks the following:

  Enter password to unlock your login keyring
  The login keyring did not get unlocked when you logged into your computer

  After that, all of it's sync and secure features are functional.

  Starting google-chrome-stable from a command line at boot without
  running the above workaround shows the following error messages:

  Gkr-Message: secret service operation failed: Did not receive a reply. 
Possible causes include: the remote application did not send a reply, the 
message bus security policy blocked the reply, the reply timeout expired, or 
the network connection was broken.
  Gkr-Message: secret service operation failed: Did not receive a reply. 
Possible causes include: the remote application did not send a reply, the 
message bus security policy blocked the reply, the reply timeout expired, or 
the network connection was broken.
  [4364:4393:0510/100407.740292:ERROR:token_service_table.cc(130)] Failed to 
decrypt token for service AccountId-108842767310111573264
  [4364:4445:0510/100407.740292:ERROR:gcm_store_impl.cc(929)] Failed to restore 
security token.

  ProblemType: Bug
  DistroRelease: Ubuntu 16.04
  Package: gnome-keyring 3.18.3-0ubuntu2
  ProcVersionSignature: Ubuntu 4.8.0-52.55~16.04.1-generic 4.8.17
  Uname: Linux 4.8.0-52-generic x86_64
  ApportVersion: 2.20.1-0ubuntu2.5
  Architecture: amd64
  CurrentDesktop: GNOME-Flashback:Unity
  Date: Wed May 10 09:43:37 2017
  SourcePackage: gnome-keyring
  UpgradeStatus: No upgrade log present (probably fresh install)

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