Here's unattended-upgrades.log when the reboot did not cause an
inconsistent state:

2017-07-26 08:33:37,462 INFO Initial blacklisted packages:
2017-07-26 08:33:37,463 INFO Initial whitelisted packages:
2017-07-26 08:33:37,463 INFO Starting unattended upgrades script
2017-07-26 08:33:37,463 INFO Allowed origins are: ['o=Ubuntu,a=xenial', 
'o=Ubuntu,a=xenial-security', 'o=UbuntuESM,a=xenial']
2017-07-26 08:38:14,276 INFO Packages that will be upgraded: apparmor apport 
apport-gtk apt-transport-https bash bind9-host cpp-5 curl dbus dbus-x11 
distro-info-data dnsutils eject evince evince-common firefox firefox-locale-en 
fonts-opensymbol g++-5 gcc-5 gcc-5-base ghostscript ghostscript-x 
gir1.2-gst-plugins-base-1.0 gir1.2-javascriptcoregtk-4.0 gir1.2-webkit2-4.0 
gstreamer1.0-alsa gstreamer1.0-plugins-base gstreamer1.0-plugins-base-apps 
gstreamer1.0-plugins-good gstreamer1.0-pulseaudio gstreamer1.0-x imagemagick 
imagemagick-6.q16 imagemagick-common libapparmor-perl libapparmor1 
libapt-inst2.0 libarchive13 libasan2 libasn1-8-heimdal libatomic1 libbind9-140 
libc-bin libc-dev-bin libc6 libc6-dbg libc6-dev libcc1-0 libcilkrts5 libcurl3 
libcurl3-gnutls libdbus-1-3 libdns-export162 libdns162 libevdocument3-4 
libevent-2.0-5 libevview3-3 libexpat1 libfreetype6 libgc1c2 libgcc-5-dev 
libgcrypt20 libgd3 libgnutls-openssl27 libgnutls30 libgomp1 libgs9 
libgs9-common libgssapi3-heimdal libgstr
 eamer-plugins-base1.0-0 libgstreamer-plugins-good1.0-0 libhcrypto4-heimdal 
libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal 
libicu55 libisc-export160 libisc160 libisccc140 libisccfg140 libitm1 libjasper1 
libjavascriptcoregtk-4.0-18 libjbig2dec0 libkrb5-26-heimdal libldap-2.4-2 
liblightdm-gobject-1-0 liblsan0 liblwres141 libmagickcore-6.q16-2 
libmagickcore-6.q16-2-extra libmagickwand-6.q16-2 libminiupnpc10 libmpx0 
libmwaw-0.3-3 libnettle6 libnl-3-200 libnl-genl-3-200 libnm-glib-vpn1 
libnm-glib4 libnm-gtk-common libnm-gtk0 libnm-util2 libnm0 libnma-common 
libnma0 libnspr4 libnss3 libnss3-nssdb liboxideqt-qmlplugin liboxideqtcore0 
liboxideqtquick0 libpcsclite1 libpoppler-glib8 libpoppler58 libpython2.7 
libpython2.7-minimal libpython2.7-stdlib libpython3.5 libpython3.5-minimal 
libpython3.5-stdlib libquadmath0 libreoffice-avmedia-backend-gstreamer 
libreoffice-base-core libreoffice-calc libreoffice-common libreoffice-core 
libreoffice-draw libreoffice-gnome libreoff
 ice-gtk libreoffice-impress libreoffice-math libreoffice-ogltrans 
libreoffice-pdfimport libreoffice-style-breeze libreoffice-style-galaxy 
libreoffice-writer libroken18-heimdal librtmp1 libsmbclient libsndfile1 
libssl1.0.0 libstdc++-5-dev libstdc++6 libtasn1-6 libtiff5 
libtracker-sparql-1.0-0 libtsan0 libubsan0 libvncclient1 libwbclient0 
libwebkit2gtk-4.0-37 libwebkit2gtk-4.0-37-gtk2 libwind0-heimdal libxml2 libxpm4 
libxslt1.1 lightdm lintian linux-firmware linux-generic linux-headers-generic 
linux-image-generic linux-libc-dev locales login multiarch-support 
network-manager network-manager-gnome ntfs-3g openssl oxideqt-codecs passwd 
poppler-utils python2.7 python2.7-minimal python3-apport python3-cryptography 
python3-pil python3-problem-report python3-uno python3.5 python3.5-minimal 
samba-libs sudo tar tcpdump thunderbird thunderbird-gnome-support 
thunderbird-locale-en thunderbird-locale-en-us tzdata uno-libs3 ure vim 
vim-common vim-runtime vim-tiny xserver-common xserver-xorg-core
2017-07-26 08:38:14,276 INFO Writing dpkg log to 
'/var/log/unattended-upgrades/unattended-upgrades-dpkg.log'
2017-07-26 08:38:15,406 WARNING SIGTERM received, will stop

Here is the unattended-upgrades.log which produced the inconsistent
state:

2017-07-26 09:19:02,321 INFO Initial blacklisted packages:
2017-07-26 09:19:02,322 INFO Initial whitelisted packages:
2017-07-26 09:19:02,322 INFO Starting unattended upgrades script
2017-07-26 09:19:02,322 INFO Allowed origins are: ['o=Ubuntu,a=xenial', 
'o=Ubuntu,a=xenial-security', 'o=UbuntuESM,a=xenial']
2017-07-26 09:19:02,323 WARNING Unclean dpkg state detected, trying to correct
2017-07-26 09:19:03,101 WARNING dpkg --configure -a output:
Setting up man-db (2.7.5-1) ...
Setting up login (1:4.2-3.1ubuntu5.3) ...

2017-07-26 09:23:24,398 INFO Packages that will be upgraded: apparmor apport 
apport-gtk apt-transport-https bind9-host cpp-5 curl dbus dbus-x11 
distro-info-data dnsutils eject evince evince-common firefox firefox-locale-en 
fonts-opensymbol g++-5 gcc-5 gcc-5-base ghostscript ghostscript-x 
gir1.2-gst-plugins-base-1.0 gir1.2-javascriptcoregtk-4.0 gir1.2-webkit2-4.0 
gstreamer1.0-alsa gstreamer1.0-plugins-base gstreamer1.0-plugins-base-apps 
gstreamer1.0-plugins-good gstreamer1.0-pulseaudio gstreamer1.0-x imagemagick 
imagemagick-6.q16 imagemagick-common libapparmor-perl libapparmor1 
libapt-inst2.0 libarchive13 libasan2 libasn1-8-heimdal libatomic1 libbind9-140 
libc-bin libc-dev-bin libc6 libc6-dbg libc6-dev libcc1-0 libcilkrts5 libcurl3 
libcurl3-gnutls libdbus-1-3 libdns-export162 libdns162 libevdocument3-4 
libevent-2.0-5 libevview3-3 libexpat1 libfreetype6 libgc1c2 libgcc-5-dev 
libgcrypt20 libgd3 libgnutls-openssl27 libgnutls30 libgomp1 libgs9 
libgs9-common libgssapi3-heimdal libgstreamer
 -plugins-base1.0-0 libgstreamer-plugins-good1.0-0 libhcrypto4-heimdal 
libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal 
libicu55 libisc-export160 libisc160 libisccc140 libisccfg140 libitm1 libjasper1 
libjavascriptcoregtk-4.0-18 libjbig2dec0 libkrb5-26-heimdal libldap-2.4-2 
liblightdm-gobject-1-0 liblsan0 liblwres141 libmagickcore-6.q16-2 
libmagickcore-6.q16-2-extra libmagickwand-6.q16-2 libminiupnpc10 libmpx0 
libmwaw-0.3-3 libnettle6 libnl-3-200 libnl-genl-3-200 libnm-glib-vpn1 
libnm-glib4 libnm-gtk-common libnm-gtk0 libnm-util2 libnm0 libnma-common 
libnma0 libnspr4 libnss3 libnss3-nssdb liboxideqt-qmlplugin liboxideqtcore0 
liboxideqtquick0 libpcsclite1 libpoppler-glib8 libpoppler58 libpython2.7 
libpython2.7-minimal libpython2.7-stdlib libpython3.5 libpython3.5-minimal 
libpython3.5-stdlib libquadmath0 libreoffice-avmedia-backend-gstreamer 
libreoffice-base-core libreoffice-calc libreoffice-common libreoffice-core 
libreoffice-draw libreoffice-gnome libreoffice-g
 tk libreoffice-impress libreoffice-math libreoffice-ogltrans 
libreoffice-pdfimport libreoffice-style-breeze libreoffice-style-galaxy 
libreoffice-writer libroken18-heimdal librtmp1 libsmbclient libsndfile1 
libssl1.0.0 libstdc++-5-dev libstdc++6 libtasn1-6 libtiff5 
libtracker-sparql-1.0-0 libtsan0 libubsan0 libvncclient1 libwbclient0 
libwebkit2gtk-4.0-37 libwebkit2gtk-4.0-37-gtk2 libwind0-heimdal libxml2 libxpm4 
libxslt1.1 lightdm lintian linux-firmware linux-generic linux-headers-generic 
linux-image-generic linux-libc-dev locales multiarch-support network-manager 
network-manager-gnome ntfs-3g openssl oxideqt-codecs passwd poppler-utils 
python2.7 python2.7-minimal python3-apport python3-cryptography python3-pil 
python3-problem-report python3-uno python3.5 python3.5-minimal samba-libs sudo 
tcpdump thunderbird thunderbird-gnome-support thunderbird-locale-en 
thunderbird-locale-en-us tzdata uno-libs3 ure vim vim-common vim-runtime 
vim-tiny xserver-common xserver-xorg-core
2017-07-26 09:23:24,402 INFO Writing dpkg log to 
'/var/log/unattended-upgrades/unattended-upgrades-dpkg.log'
2017-07-26 09:24:54,269 WARNING SIGTERM received, will stop
2017-07-26 09:24:54,270 WARNING SIGTERM received, will stop
2017-07-26 09:24:54,615 WARNING SIGTERM received, will stop

And part of the corresponding unattended-upgrades-dpkg.log file:

Preparing to unpack .../linux-image-generic_4.4.0.87.93_amd64.deb ...^M
Unpacking linux-image-generic (4.4.0.87.93) over (4.4.0.38.40) ...^M
Selecting previously unselected package linux-headers-4.4.0-87.^M
Preparing to unpack .../linux-headers-4.4.0-87_4.4.0-87.110_all.deb ...^M
Unpacking linux-headers-4.4.0-87 (4.4.0-87.110) ...^M
SIGTERM received, will stop
E:Sub-process /usr/bin/dpkg exited unexpectedly

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You received this bug notification because you are a member of Ubuntu
Touch seeded packages, which is subscribed to apt in Ubuntu.
https://bugs.launchpad.net/bugs/1690980

Title:
  unattended-upgrades does not block shutdown of system, as it is
  designed to

Status in OEM Priority Project:
  Triaged
Status in OEM Priority Project xenial series:
  New
Status in apt package in Ubuntu:
  Fix Committed
Status in unattended-upgrades package in Ubuntu:
  Fix Committed

Bug description:
  Title: No pop-up window to warn users that system should not reboot or
  shutdown while installing security updates

  Summary:
  No pop-up window to warn users that system should not reboot or shutdown 
while installing security updates

  Steps:
  1. trigger unattended-upgrades
  2. reboot or shutdown system while installing packages

  Expected results: There is a pop-up window to warn users that system
  should not reboot or shutdown

  Actual results: There is no pop-up window to warn users

  Additional information:
  $ apt-cache policy unattended-upgrades
  unattended-upgrades:
    Installed: 0.90
    Candidate: 0.90ubuntu0.5
  $ lsb_release -rd
  Description:    Ubuntu 16.04 LTS

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https://bugs.launchpad.net/oem-priority/+bug/1690980/+subscriptions

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