The most plausible explanation for enumerating /usr/local/bin/ is that
ntpd has some hooks.d/ mechanism which gets called after syncing the
time, and that runs a shell in between. So IMHO this should be allowed.

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https://bugs.launchpad.net/bugs/1741227

Title:
  apparmor denial to several paths to binaries

Status in ntp package in Ubuntu:
  Confirmed

Bug description:
  Issue shows up (non fatal) as:
   apparmor="DENIED" operation="open" profile="/usr/sbin/ntpd" 
name="/usr/local/sbin/" pid=23933 comm="ntpd" requested_mask="r" 
denied_mask="r" fsuid=0 ouid=0
   apparmor="DENIED" operation="open" profile="/usr/sbin/ntpd" 
name="/usr/local/bin/" pid=23933 comm="ntpd" requested_mask="r" denied_mask="r" 
fsuid=0 ouid=0

  Since non crit this is mostyl about many of us being curious why it
  actually does do it :-)

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