Are you sure this is due to the above patch, can you try without it?

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https://bugs.launchpad.net/bugs/1691678

Title:
  Scrollbars escape the bottom and right side of the Terminal window by
  1px

Status in gnome-terminal package in Ubuntu:
  Confirmed
Status in gtk+3.0 package in Ubuntu:
  Confirmed

Bug description:
  Ubuntu's orange overlay scrollbars escape the bottom of the window
  during resizing.

  To reproduce try gnome-shell on artful using the Ambiance theme. Open
  a Terminal window and resize it vertically, quickly. Notice the bottom
  of the overlay scrollbar overruns the bottom of the window.

  ProblemType: Bug
  DistroRelease: Ubuntu 17.10
  Package: gnome-shell 3.24.2-0ubuntu3
  ProcVersionSignature: Ubuntu 4.10.0-20.22-generic 4.10.8
  Uname: Linux 4.10.0-20-generic x86_64
  ApportVersion: 2.20.5-0ubuntu3
  Architecture: amd64
  Date: Thu May 18 15:28:33 2017
  DisplayManager: lightdm
  GsettingsChanges:
   b'org.gnome.shell' b'app-picker-view' b'uint32 1'
   b'org.gnome.shell' b'favorite-apps' b"['firefox.desktop', 
'org.gnome.Terminal.desktop', 'rhythmbox.desktop', 
'org.gnome.Nautilus.desktop', 'org.gnome.Software.desktop', 'yelp.desktop']"
   b'org.gnome.desktop.interface' b'gtk-im-module' b"'gtk-im-context-simple'"
   b'org.gnome.desktop.interface' b'scaling-factor' b'uint32 1'
  InstallationDate: Installed on 2017-05-03 (15 days ago)
  InstallationMedia: Ubuntu 17.10 "Artful Aardvark" - Alpha amd64 (20170502)
  SourcePackage: gnome-shell
  UpgradeStatus: No upgrade log present (probably fresh install)

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