Actually, it's even weirder than that.

I went through all this several times while trying to narrow down the
repro steps, and it's all very bizarre. Somehow I managed to get gdm
working again, and then in a logged in gdm session, I enabled
fingerprint, and exited from pam-auth-update, then ran pam-auth-update
again and disabled fingerprint and re-enabled register user sessions
which had once again somehow magically gotten disabled, but then I ran
pam-auth-update a third time and register user sessions was STILL
disabled even though I'd just enabled it, and then when I rebooted GDM
wouldn't work again. So at that point I logged in on a VT and ran pam-
auth-update again and selected register user sessions again, and then
just out of curiosity ran pam-auth-update again and this time register
user sessions was still selected, so I exited and rebooted and GDM
worked again.

There is something very bizarre going on here.

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Touch seeded packages, which is subscribed to pam in Ubuntu.
https://bugs.launchpad.net/bugs/1817897

Title:
  attempting to enable fingerprint with pam-auth-update breaks gdm

Status in pam package in Ubuntu:
  New

Bug description:
  I ran sudo pam-auth-update, enabled "Fingerprint authentication",
  selected "OK", and then rebooted.

  GDM wouldn't start after the reboot:

  Feb 27 06:29:41 jik-x1 /usr/lib/gdm3/gdm-wayland-session[1551]: 
dbus-daemon[1553]: [session uid=121 pid=1553] Activating service 
name='org.freedesktop.systemd1' requested by ':1.0' (uid=121 pid=1551 
comm="/usr/lib/gdm3/gdm-wayland-session gnome-session --" label="unconfined")
  Feb 27 06:29:41 jik-x1 /usr/lib/gdm3/gdm-wayland-session[1551]: 
dbus-daemon[1553]: [session uid=121 pid=1553] Activated service 
'org.freedesktop.systemd1' failed: Process org.freedesktop.systemd1 exited with 
status 1
  Feb 27 06:29:41 jik-x1 /usr/lib/gdm3/gdm-wayland-session[1551]: Unable to 
register display with display manager

  I logged in on a VT and ran pam-auth-update again. I observed that
  "Register user sessions in the systemd control group" was not
  selected, even though my recollection was that it had been selected
  before I enabled fingerprint authentication, and I didn't disable it.

  I unselected fingerprint authentication and selected "Register user
  sessions in the systemd control group" and rebooted again. GDM started
  working again.

  ProblemType: Bug
  DistroRelease: Ubuntu 19.04
  Package: libpam-runtime 1.3.1-5ubuntu1
  ProcVersionSignature: Ubuntu 4.19.0-13.14-generic 4.19.20
  Uname: Linux 4.19.0-13-generic x86_64
  ApportVersion: 2.20.10-0ubuntu21
  Architecture: amd64
  CurrentDesktop: ubuntu:GNOME
  Date: Wed Feb 27 06:31:32 2019
  InstallationDate: Installed on 2019-02-26 (0 days ago)
  InstallationMedia: Ubuntu 18.04.2 LTS "Bionic Beaver" - Release amd64 
(20190210)
  PackageArchitecture: all
  SourcePackage: pam
  UpgradeStatus: Upgraded to disco on 2019-02-26 (0 days ago)

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