This is broken in vivid and utopic as well.  A testcase is attached that
shows the issue, with output like the following:

http://paste.ubuntu.com/10549928/

** Changed in: apt (Ubuntu)
       Status: Fix Released => New

** Also affects: apt (Ubuntu Utopic)
   Importance: Undecided
       Status: New

** Attachment added: "foo.tar.gz"
   
https://bugs.launchpad.net/ubuntu/+source/apt/+bug/1429041/+attachment/4336036/+files/foo.tar.gz

** Also affects: apt (Ubuntu Trusty)
   Importance: Undecided
       Status: New

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https://bugs.launchpad.net/bugs/1429041

Title:
  Autoremoval not working reliable on precise

Status in apt package in Ubuntu:
  New
Status in apt source package in Precise:
  New
Status in apt source package in Trusty:
  New
Status in apt source package in Utopic:
  New

Bug description:
  The APT::Never-MarkAuto-Sections in precise is not working reliable.
  Apt is not always looking at the section of the version to be
  installed but instead may look at a random versions section.

  This breaks "apt-get autoremove" for no-longer-required kernels.

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