You can have a separate partition, on the 16GB part of the disk, where /usr will be mounted. Most of the software is in /usr and you will never fill the whole 4GB partition (where / is mounted). You can do that during the install procedure by choosing a custom partitioning scheme. You can also create this partition from a Live system (such as a Trisquel Live pendrive) with GParted, move everything from your current /usr to the new partition and add to /etc/fstab the line that will mount during the init, the file system of your new partition on /usr.

Notice also that cleaning, from time to time, the cache of APT (with the command 'sudo apt-get clean' or from the Synaptic package manager) saves quite some (hundreds of) megabytes.

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