That is usually how someone "uses" a program, yes. I'm aware that people sometimes broaden "use" to mean distributing or incorporating something into another program, but from a legal perspective, a user is someone who runs a program. In this manner, free software licenses do not restrict use in the slightest (and they cannot, or else they do not meet the Free Software Definition). Copyleft only kicks in when the program is distributed, which is something else entirely.

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